Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Csal_1101 - Oceanospirillales/Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Metabolite transport
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 4 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Reinekea sp. MED297
Oceanospirillum sp. MED92
Oceanobacter sp. RED65
Marinomonas sp. MWYL1
Hahella chejuensis KCTC 2396
Chromohalobacter salexigens DSM 3043 2 2
Alcanivorax borkumensis SK2
Cellvibrio japonicus Ueda107
Saccharophagus degradans 2-40
Teredinibacter turnerae T7901
Marinobacter sp. ELB17
Marinobacter aqueolei
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF01810
 
Reinekea sp. MED297
 
Oceanospirillum sp. MED92
 
Oceanobacter sp. RED65
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_1451: Transporter, LysE family
 
Hahella chejuensis KCTC 2396
*
Chromohalobacter salexigens DSM 3043

Site:
position = -108
score = 7.74356
sequence = GATTGTCAT-(1)-GTGACAATA

Site:
position = -21
score = 7.54172
sequence = AATTGTGAG-(0)-GGTACAATC

Gene: Csal_1102: Transporter, LysE family
 
Alcanivorax borkumensis SK2
 
Cellvibrio japonicus Ueda107
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Marinobacter sp. ELB17
 
Marinobacter aqueolei
Transporter, LysE family
 
CRON 2.
Csal_1101
 
Reinekea sp. MED297
 
Oceanospirillum sp. MED92
 
Oceanobacter sp. RED65
 
Marinomonas sp. MWYL1
 
Hahella chejuensis KCTC 2396
*
Chromohalobacter salexigens DSM 3043

Site:
position = -96
score = 7.54172
sequence = GATTGTACC-(0)-CTCACAATT

Site:
position = -10
score = 7.74356
sequence = TATTGTCAC-(1)-ATGACAATC

Gene: Csal_1101: Transcriptional regulator, GntR family
 
Alcanivorax borkumensis SK2
 
Cellvibrio japonicus Ueda107
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Marinobacter sp. ELB17
 
Marinobacter aqueolei
Transcriptional regulator, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD