Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxQ - Nocardiaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis; Metabolite transport
Effector: Pyridoxal-5-phosphate
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 3 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Nocardia farcinica IFM 10152
Rhodococcus erythropolis PR4 3 3
Rhodococcus opacus B4
Rhodococcus sp. RHA1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdxQ
 
Nocardia farcinica IFM 10152
*
Rhodococcus erythropolis PR4

Site:
position = -19
score = 9.07954
sequence = AGCGCTACTAT-(15)-ATGATAGCAGT

Gene: RER_10490: Transcriptional regulator, GntR/MocR family
 
Rhodococcus opacus B4
 
Rhodococcus sp. RHA1
Transcriptional regulator, GntR/MocR family
 
CRON 2.
PF00155
 
Nocardia farcinica IFM 10152
*
Rhodococcus erythropolis PR4

Site:
position = -156
score = 9.07954
sequence = ACTGCTATCAT-(15)-ATAGTAGCGCT

Gene: RER_10480: Pyridoxal phosphate-dependent transferase
 
Rhodococcus opacus B4
 
Rhodococcus sp. RHA1
Pyridoxal phosphate-dependent transferase
 
CRON 3.
PF00892
 
Nocardia farcinica IFM 10152
*
Rhodococcus erythropolis PR4

Site:
position = -64
score = 9.099
sequence = ACTGCTATCGT-(15)-AGAGTAGCGCT

Gene: RER_26220: Permease of the drug/metabolite transporter (DMT) superfamily
 
Rhodococcus opacus B4
 
Rhodococcus sp. RHA1
Permease of the drug/metabolite transporter (DMT) superfamily
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD