Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxQ - Mycobacteriaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis; Metabolite transport
Effector: Pyridoxal-5-phosphate
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 4 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Mycobacterium abscessus ATCC 19977 2 2
Mycobacterium avium 104
Mycobacterium marinum M
Mycobacterium leprae TN
Mycobacterium tuberculosis H37Rv
Mycobacterium smegmatis str. MC2 155 2 2
Mycobacterium vanbaalenii PYR-1
Mycobacterium flavescens PYR-GCK
Mycobacterium sp. JLS
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF00892
*
Mycobacterium abscessus ATCC 19977

Site:
position = -40
score = 9.00635
sequence = ACTGCTACCAT-(15)-ATAGTAGCGCT

Gene: MAB_0811: Permease of the drug/metabolite transporter (DMT) superfamily
 
Mycobacterium avium 104
 
Mycobacterium marinum M
 
Mycobacterium leprae TN
 
Mycobacterium tuberculosis H37Rv
*
Mycobacterium smegmatis str. MC2 155

Site:
position = -16
score = 8.74052
sequence = GGTGCTATCGT-(15)-AGAGTAGCGCT

Gene: MSMEG_0425: Permease of the drug/metabolite transporter (DMT) superfamily
 
Mycobacterium vanbaalenii PYR-1
 
Mycobacterium flavescens PYR-GCK
 
Mycobacterium sp. JLS
Permease of the drug/metabolite transporter (DMT) superfamily
 
CRON 2.
pdxQ
*
Mycobacterium abscessus ATCC 19977

Site:
position = -46
score = 9.00635
sequence = AGCGCTACTAT-(15)-ATGGTAGCAGT

Gene: MAB_0810c: Transcriptional regulator, GntR/MocR family
 
Mycobacterium avium 104
 
Mycobacterium marinum M
 
Mycobacterium leprae TN
 
Mycobacterium tuberculosis H37Rv
*
Mycobacterium smegmatis str. MC2 155

Site:
position = -55
score = 8.74052
sequence = AGCGCTACTCT-(15)-ACGATAGCACC

Gene: MSMEG_0426: Transcriptional regulator, GntR/MocR family
 
Mycobacterium vanbaalenii PYR-1
 
Mycobacterium flavescens PYR-GCK
 
Mycobacterium sp. JLS
Transcriptional regulator, GntR/MocR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD