Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NorR - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrosative stress response
Effector: Nitric oxide
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 91 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1
Shewanella putrefaciens CN-32 2 2
Shewanella sp W3-18-1 2 2
Shewanella sp ANA-3 2 2
Shewanella sp MR-4 2 2
Shewanella sp MR-7 2 2
Shewanella baltica OS155
Shewanella denitrificans OS217
Shewanella frigidimarina NCIMB 400 4 3
Shewanella amazonensis SB2B 2 2
Shewanella loihica PV-4 2 2
Shewanella pealeana ATCC 700345 3 2
Shewanella halifaxensis HAW-EB4 4 3
Shewanella piezotolerans WP3 8 5
Shewanella sediminis HAW-EB3 4 3
Shewanella woodyi ATCC 51908 5 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
swp_4283
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
*
Shewanella piezotolerans WP3

Site:
position = -131
score = 5.0821
sequence = CGTAGTCATTATGACTACA

Site:
position = -156
score = 4.84049
sequence = ATGAGTCATAATGACTACA

Gene: swp_4283: hypothetical protein
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
hypothetical protein
nnrS2
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3

Gene: swp_4284: NnrS protein involved in response to NO
 
Shewanella sediminis HAW-EB3
*
Shewanella woodyi ATCC 51908

Site:
position = -525
score = 5.46292
sequence = TAGAGTCAATATGACTACA

Site:
position = -499
score = 4.9493
sequence = TGTAGTCATATTGACTCAC

Gene: Swoo_0686: NnrS protein involved in response to NO
NnrS protein involved in response to NO
hmp2
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3

Gene: swp_4285: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908

Gene: Swoo_0685: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
 
CRON 2.
norR
 
Shewanella oneidensis MR-1
*
Shewanella putrefaciens CN-32

Site:
position = -50
score = 4.59571
sequence = CTGTGTCAATATCACAATT

Gene: Sputcn32_3073: anaerobic nitric oxide reductase transcription regulator, Fis family
*
Shewanella sp W3-18-1

Site:
position = -50
score = 4.59571
sequence = CTGTGTCAATATCACAATT

Gene: Sputw3181_0872: anaerobic nitric oxide reductase transcription regulator, Fis family
*
Shewanella sp ANA-3

Site:
position = -166
score = 3.72087
sequence = AGGTGTCGTTTAGGCACCT

Site:
position = -58
score = 4.63253
sequence = CTGTGTCAATATAACAATC

Gene: Shewana3_0845: anaerobic nitric oxide reductase transcription regulator, Fis family
*
Shewanella sp MR-4

Site:
position = -167
score = 3.72087
sequence = AGGTGTCGTTTAGGCACCT

Site:
position = -58
score = 4.63253
sequence = CTGTGTCAATATAACAATC

Gene: Shewmr4_3090: anaerobic nitric oxide reductase transcription regulator, Fis family
*
Shewanella sp MR-7

Site:
position = -58
score = 4.63253
sequence = CTGTGTCAATATAACAATC

Site:
position = -166
score = 3.72087
sequence = AGGTGTCGTTTAGGCACCT

Gene: Shewmr7_0882: anaerobic nitric oxide reductase transcription regulator, Fis family
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
*
Shewanella frigidimarina NCIMB 400

Site:
position = -58
score = 4.38444
sequence = TGTTGTTATATTCACACTT

Site:
position = -43
score = 4.96936
sequence = ACTTGTCATAATGACATCA

Gene: Sfri_3254: anaerobic nitric oxide reductase transcription regulator, Fis family
*
Shewanella amazonensis SB2B

Site:
position = -76
score = 5.01437
sequence = CCATGTCAAAATGACAATT

Gene: Sama_0727: anaerobic nitric oxide reductase transcription regulator, Fis family
*
Shewanella loihica PV-4

Site:
position = -120
score = 5.25223
sequence = AAGTGTAAAAATGACAATA

Site:
position = -96
score = 4.3845
sequence = TACTGTTAAATTGACATAT

Gene: Shew_0656: anaerobic nitric oxide reductase transcription regulator, Fis family
*
Shewanella pealeana ATCC 700345

Site:
position = -154
score = 4.69552
sequence = AAGTGTAAAATTGACATTG

Site:
position = -119
score = 4.13362
sequence = TACTGTTAAAAAGACACAC

Gene: Spea_3444: anaerobic nitric oxide reductase transcription regulator, Fis family
*
Shewanella halifaxensis HAW-EB4

Site:
position = -86
score = 4.28713
sequence = TACTGTAAAAAAGACAGCA

Gene: Shal_3555: anaerobic nitric oxide reductase transcription regulator, Fis family
*
Shewanella piezotolerans WP3

Site:
position = -105
score = 4.15652
sequence = AACAGTATATTTGACACTG

Site:
position = -72
score = 4.94906
sequence = TAATGTCAAAAAGACAAAA

Gene: swp_0832: anaerobic nitric oxide reductase transcription regulator, Fis family
*
Shewanella sediminis HAW-EB3

Site:
position = -136
score = 5.15727
sequence = AAATGTCAATATGACAAGC

Site:
position = -160
score = 4.0983
sequence = TTTTGTATTTATGACAGCA

Gene: Ssed_3823: anaerobic nitric oxide reductase transcription regulator, Fis family
*
Shewanella woodyi ATCC 51908

Site:
position = -62
score = 5.19409
sequence = GATTGTCAAAATGACATAC

Site:
position = -37
score = 4.11024
sequence = TATGGTCATATTCAAACCA

Gene: Swoo_0760: anaerobic nitric oxide reductase transcription regulator, Fis family
anaerobic nitric oxide reductase transcription regulator, Fis family
 
CRON 3.
norR2
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
*
Shewanella piezotolerans WP3

Site:
position = -118
score = 5.0821
sequence = TGTAGTCATAATGACTACG

Site:
position = -93
score = 4.84049
sequence = TGTAGTCATTATGACTCAT

Gene: swp_4282: anaerobic nitric oxide reductase transcription regulator, Fis family
 
Shewanella sediminis HAW-EB3
*
Shewanella woodyi ATCC 51908

Site:
position = -118
score = 4.9493
sequence = GTGAGTCAATATGACTACA

Site:
position = -92
score = 5.46292
sequence = TGTAGTCATATTGACTCTA

Gene: Swoo_0688: anaerobic nitric oxide reductase transcription regulator, Fis family
anaerobic nitric oxide reductase transcription regulator, Fis family
 
CRON 4.
norV
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
*
Shewanella frigidimarina NCIMB 400

Site:
position = -195
score = 4.84132
sequence = CAAAGTCATAATGACACCC

Site:
position = -176
score = 4.35117
sequence = GATAGTCATAAAGACATAG

Site:
position = -152
score = 4.86172
sequence = AATTGTTATAATGACACCC

Gene: Sfri_1583: Anaerobic nitric oxide reductase flavorubredoxin
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
*
Shewanella pealeana ATCC 700345

Site:
position = -145
score = 3.79873
sequence = CGCTATCAAAAAGACAGTG

Site:
position = -169
score = 4.25024
sequence = ATATGTCACTTTGACATTT

Site:
position = -188
score = 4.58715
sequence = AGGTGTCTTATTGACAGCT

Site:
position = -237
score = 3.98633
sequence = TATAGTCGTTTGGTCACTG

Gene: Spea_3652: Anaerobic nitric oxide reductase flavorubredoxin
*
Shewanella halifaxensis HAW-EB4

Site:
position = -144
score = 3.95391
sequence = TGCTATCAAAAAGACATTG

Site:
position = -188
score = 4.75448
sequence = GACTGTCTTAATGACATTT

Site:
position = -168
score = 4.87172
sequence = TACGGTCATTTTGACTGTT

Gene: Shal_3740: Anaerobic nitric oxide reductase flavorubredoxin
*
Shewanella piezotolerans WP3

Site:
position = -138
score = 5.1156
sequence = TGTTGTCATTATTACAATT

Site:
position = -162
score = 4.47872
sequence = GAGTGTCTTTATGATACTT

Site:
position = -182
score = 4.16177
sequence = GGGTGTCTTAATGACATAG

Site:
position = -207
score = 4.02788
sequence = CTTTGTCATAAAGACTCGG

Gene: swp_1079: Anaerobic nitric oxide reductase flavorubredoxin
*
Shewanella sediminis HAW-EB3

Site:
position = -133
score = 4.03593
sequence = GCATGTCTTTATGACATCT

Site:
position = -157
score = 4.06276
sequence = CAATGTCTTTTGGACAGTT

Site:
position = -176
score = 4.63496
sequence = TAGTGTTGATATGACACTG

Site:
position = -213
score = 4.06163
sequence = TCCTGTTATTAAGACACTC

Gene: Ssed_4053: Anaerobic nitric oxide reductase flavorubredoxin
 
Shewanella woodyi ATCC 51908
Anaerobic nitric oxide reductase flavorubredoxin
norW
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1582: Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-)
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345

Gene: Spea_3651: Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_3739: Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-)
 
Shewanella piezotolerans WP3

Gene: swp_1080: Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_4052: Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-)
 
Shewanella woodyi ATCC 51908
Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-)
 
CRON 5.
norB
 
Shewanella oneidensis MR-1
*
Shewanella putrefaciens CN-32

Site:
position = -120
score = 4.1384
sequence = ACGTATCAAAAAGACACTC

Site:
position = -144
score = 5.6927
sequence = AATTGTCATTATGACACTT

Site:
position = -162
score = 4.87073
sequence = TAGTGTCATAAAAACAATA

Site:
position = -190
score = 3.90948
sequence = GATTGTTTTAAAGACACAA

Gene: Sputcn32_3072: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
*
Shewanella sp W3-18-1

Site:
position = -120
score = 4.1384
sequence = ACGTATCAAAAAGACACTC

Site:
position = -144
score = 5.6927
sequence = AATTGTCATTATGACACTT

Site:
position = -190
score = 3.90948
sequence = GATTGTTTTAAAGACACAA

Site:
position = -162
score = 4.87073
sequence = TAGTGTCATAAAAACAATA

Gene: Sputw3181_0873: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
*
Shewanella sp ANA-3

Site:
position = -131
score = 4.59722
sequence = CAGTATCAAAAAGACAATC

Site:
position = -156
score = 4.54334
sequence = CACTGTCATATCAACAATC

Site:
position = -174
score = 4.92177
sequence = AGCTGTCATAAAGACAATC

Site:
position = -203
score = 3.59437
sequence = CATTGTGTTATCGACATAC

Gene: Shewana3_0846: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
*
Shewanella sp MR-4

Site:
position = -156
score = 5.40131
sequence = AACTGTCATATCGACAATA

Site:
position = -131
score = 4.5604
sequence = CAGTATCAAAAAGACAATT

Site:
position = -174
score = 4.53737
sequence = AGCTGTCACAAAGACAATA

Site:
position = -203
score = 4.00669
sequence = CATTGTGTTATCGACATTC

Site:
position = -33
score = 3.6257
sequence = ACGTATCAAAATGACGTTG

Gene: Shewmr4_3089: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
*
Shewanella sp MR-7

Site:
position = -203
score = 4.00669
sequence = CATTGTGTTATCGACATTC

Site:
position = -174
score = 5.02308
sequence = AGCTGTCATAAAGACAATA

Site:
position = -156
score = 4.96688
sequence = AGCTGTCATATCGACAACA

Site:
position = -131
score = 4.69852
sequence = CAGTATCAAAAAGACAATA

Gene: Shewmr7_0883: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
*
Shewanella frigidimarina NCIMB 400

Site:
position = -138
score = 4.72435
sequence = ATGTGTCAATAAGACTATT

Site:
position = -162
score = 4.72435
sequence = AATAGTCTTATTGACACAT

Site:
position = -181
score = 4.69351
sequence = CGCTGTCATTTCGACATTA

Gene: Sfri_3253: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
*
Shewanella amazonensis SB2B

Site:
position = -169
score = 4.8046
sequence = TAGTGTCATTTATACAATT

Site:
position = -149
score = 4.54955
sequence = AAATGTCTTTATGACATCA

Gene: Sama_0728: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
*
Shewanella loihica PV-4

Site:
position = -132
score = 5.88209
sequence = GATTGTCATTATGACAATT

Site:
position = -157
score = 4.63823
sequence = CGGTGTCATTTTTACACTT

Site:
position = -175
score = 4.54
sequence = CACTGTCTTTTTGACACGC

Site:
position = -204
score = 4.15652
sequence = AAGTATCAAATCGACACAG

Gene: Shew_0657: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
 
Shewanella pealeana ATCC 700345
*
Shewanella halifaxensis HAW-EB4

Site:
position = -165
score = 4.05507
sequence = CGTTATCAAATAGACAGCT

Site:
position = -186
score = 4.51054
sequence = AGATGTCAATTCGACAAAG

Site:
position = -142
score = 5.25622
sequence = CACAGTCAAAATGACAACA

Gene: Shal_3554: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
*
Shewanella piezotolerans WP3

Site:
position = -173
score = 5.21098
sequence = CATTGTCAAAAAGACACTT

Site:
position = -155
score = 4.75391
sequence = TAGTGTCATATGGACACAC

Site:
position = -131
score = 5.11117
sequence = CATTGTCTTTATGACAACC

Gene: swp_0833: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
*
Shewanella sediminis HAW-EB3

Site:
position = -129
score = 4.4647
sequence = GGGTGTCCTAATGACACAA

Site:
position = -171
score = 4.85545
sequence = AAGTGTAAAAATGACACTG

Site:
position = -153
score = 4.25673
sequence = GGCTGTTATTAAGACACTA

Gene: Ssed_3822: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
*
Shewanella woodyi ATCC 51908

Site:
position = -130
score = 4.9939
sequence = CATAGTCATAATGACACAT

Site:
position = -154
score = 5.10933
sequence = AACTGTCATTTTTACAATA

Site:
position = -172
score = 4.94249
sequence = AGCTGTCATTTAGACACTA

Site:
position = -199
score = 4.03081
sequence = ATCAGTCATATTGATATTC

Gene: Swoo_0761: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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