Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog H16_A0963 - Ralstonia

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Cupriavidus taiwanensis 1 1
Ralstonia eutropha H16 1 1
Ralstonia eutropha JMP134 1 1
Ralstonia metallidurans CH34 2 1
Ralstonia pickettii 12J 1 1
Ralstonia solanacearum GMI1000
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF02627
*
Cupriavidus taiwanensis

Site:
position = -142
score = 12.5779
sequence = ATTGGTCTA-(15)-ATTGGCAGT-(4)-GGGGCCAAT

Gene: RALTA_A0958: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein
*
Ralstonia eutropha H16

Site:
position = -84
score = 12.5779
sequence = ATTGGTCTA-(15)-ATTGGCAGT-(4)-GGGGCCAAT

Gene: H16_A0964: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein
*
Ralstonia eutropha JMP134

Site:
position = -125
score = 10.3993
sequence = ACCGGTTAC-(15)-ATCGGCCAT-(5)-ATAACCAGT

Gene: Reut_A1806: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein
*
Ralstonia metallidurans CH34

Site:
position = -115
score = 9.72029
sequence = ATTGGTCAC-(16)-ATCGGTACT-(5)-GTCACCACT

Gene: Rmet_4317: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein
*
Ralstonia pickettii 12J

Site:
position = -92
score = 12.5244
sequence = GGTGGCTAC-(15)-ATTGGCGAT-(5)-GGTGCCACT

Gene: Rpic_3612: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein
 
Ralstonia solanacearum GMI1000
4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein
PF07883
 
Cupriavidus taiwanensis
 
Ralstonia eutropha H16
 
Ralstonia eutropha JMP134
 
Ralstonia metallidurans CH34

Gene: Rmet_4316: Cupin 2, conserved barrel
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
Cupin 2, conserved barrel
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD