Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NhaR - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: activator
Biological process: Osmotic stress response
Effector: Potassium ion
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 33 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 8 2
Shewanella putrefaciens CN-32 8 2
Shewanella sp W3-18-1 8 2
Shewanella sp ANA-3 9 3
Shewanella sp MR-4 9 3
Shewanella sp MR-7 9 3
Shewanella baltica OS155 8 2
Shewanella denitrificans OS217 3 1
Shewanella frigidimarina NCIMB 400 8 2
Shewanella amazonensis SB2B 3 1
Shewanella loihica PV-4 3 1
Shewanella pealeana ATCC 700345 8 2
Shewanella halifaxensis HAW-EB4 8 2
Shewanella piezotolerans WP3 8 2
Shewanella sediminis HAW-EB3 8 2
Shewanella woodyi ATCC 51908 5 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nhaA
*
Shewanella oneidensis MR-1

Site:
position = -97
score = 5.55796
sequence = CCTCGGAATAGCCGAGG

Gene: SO_1336: Na+/H+ antiporter NhaA
*
Shewanella putrefaciens CN-32

Site:
position = -96
score = 5.55796
sequence = CCTCGGAATAGCCGAGG

Gene: Sputcn32_1147: Na+/H+ antiporter NhaA
*
Shewanella sp W3-18-1

Site:
position = -96
score = 5.55796
sequence = CCTCGGAATAGCCGAGG

Gene: Sputw3181_3017: Na+/H+ antiporter NhaA
*
Shewanella sp ANA-3

Site:
position = -97
score = 6.0169
sequence = CCTCGGAATTATCGAGG

Gene: Shewana3_3038: Na+/H+ antiporter NhaA
*
Shewanella sp MR-4

Site:
position = -96
score = 5.74843
sequence = CCTCGGAATTAACGAGG

Gene: Shewmr4_2860: Na+/H+ antiporter NhaA
*
Shewanella sp MR-7

Site:
position = -96
score = 5.74843
sequence = CCTCGGAATTAACGAGG

Gene: Shewmr7_2942: Na+/H+ antiporter NhaA
*
Shewanella baltica OS155

Site:
position = -96
score = 5.76554
sequence = CCTCGGAATAACCGAGG

Gene: Sbal_1189: Na+/H+ antiporter NhaA
*
Shewanella denitrificans OS217

Site:
position = -93
score = 4.3504
sequence = TATCGGTATTATCGATA

Gene: Sden_2778: Na+/H+ antiporter NhaA
*
Shewanella frigidimarina NCIMB 400

Site:
position = -94
score = 5.02399
sequence = CCTCGGTTAAACCGAGT

Gene: Sfri_2941: Na+/H+ antiporter NhaA
*
Shewanella amazonensis SB2B

Site:
position = -98
score = 5.94744
sequence = CCTCGGAAATTTCGAGG

Gene: Sama_0868: Na+/H+ antiporter NhaA
*
Shewanella loihica PV-4

Site:
position = -97
score = 5.63548
sequence = CCTCGGAATTACCGATG

Gene: Shew_1042: Na+/H+ antiporter NhaA
*
Shewanella pealeana ATCC 700345

Site:
position = -97
score = 4.60242
sequence = CTTCGGATATTCCGACG

Site:
position = -292
score = 4.68308
sequence = GCTCGTTATTTTCGATG

Gene: Spea_1025: Na+/H+ antiporter NhaA
*
Shewanella halifaxensis HAW-EB4

Site:
position = -97
score = 4.6018
sequence = CTTCGGATATCCCGATG

Site:
position = -292
score = 4.65907
sequence = CTTCGATTTTTTCGAGT

Gene: Shal_1071: Na+/H+ antiporter NhaA
*
Shewanella piezotolerans WP3

Site:
position = -174
score = 5.31465
sequence = CCTCGGATATTCCGATG

Gene: swp_3792: Na+/H+ antiporter NhaA
*
Shewanella sediminis HAW-EB3

Site:
position = -96
score = 5.46945
sequence = CCTCGGGAATACCGATG

Gene: Ssed_1136: Na+/H+ antiporter NhaA
 
Shewanella woodyi ATCC 51908
Na+/H+ antiporter NhaA
SO1337
 
Shewanella oneidensis MR-1

Gene: SO_1337: hypothetical protein
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1148: hypothetical protein
 
Shewanella sp W3-18-1

Gene: Sputw3181_3016: hypothetical protein
 
Shewanella sp ANA-3

Gene: Shewana3_3037: hypothetical protein
 
Shewanella sp MR-4

Gene: Shewmr4_2859: hypothetical protein
 
Shewanella sp MR-7

Gene: Shewmr7_2941: hypothetical protein
 
Shewanella baltica OS155

Gene: Sbal_1190: hypothetical protein
 
Shewanella denitrificans OS217

Gene: Sden_2777: hypothetical protein
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2940: hypothetical protein
 
Shewanella amazonensis SB2B

Gene: Sama_0869: hypothetical protein
 
Shewanella loihica PV-4

Gene: Shew_1043: hypothetical protein
 
Shewanella pealeana ATCC 700345

Gene: Spea_1026: hypothetical protein
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_1072: hypothetical protein
 
Shewanella piezotolerans WP3

Gene: swp_3791: hypothetical protein
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1137: hypothetical protein
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1232: hypothetical protein
hypothetical protein
nhaR
 
Shewanella oneidensis MR-1

Gene: SO_1338: Transcriptional activator of sodium-proton antiporter, LysR family
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1149: Transcriptional activator of sodium-proton antiporter, LysR family
 
Shewanella sp W3-18-1

Gene: Sputw3181_3015: Transcriptional activator of sodium-proton antiporter, LysR family
 
Shewanella sp ANA-3

Gene: Shewana3_3036: Transcriptional activator of sodium-proton antiporter, LysR family
 
Shewanella sp MR-4

Gene: Shewmr4_2858: Transcriptional activator of sodium-proton antiporter, LysR family
 
Shewanella sp MR-7

Gene: Shewmr7_2940: Transcriptional activator of sodium-proton antiporter, LysR family
 
Shewanella baltica OS155

Gene: Sbal_1191: Transcriptional activator of sodium-proton antiporter, LysR family
 
Shewanella denitrificans OS217

Gene: Sden_2776: Transcriptional activator of sodium-proton antiporter, LysR family
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2939: Transcriptional activator of sodium-proton antiporter, LysR family
 
Shewanella amazonensis SB2B

Gene: Sama_0870: Transcriptional activator of sodium-proton antiporter, LysR family
 
Shewanella loihica PV-4

Gene: Shew_1044: Transcriptional activator of sodium-proton antiporter, LysR family
 
Shewanella pealeana ATCC 700345

Gene: Spea_1027: Transcriptional activator of sodium-proton antiporter, LysR family
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_1073: Transcriptional activator of sodium-proton antiporter, LysR family
 
Shewanella piezotolerans WP3

Gene: swp_3790: Transcriptional activator of sodium-proton antiporter, LysR family
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1138: Transcriptional activator of sodium-proton antiporter, LysR family
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1233: Transcriptional activator of sodium-proton antiporter, LysR family
Transcriptional activator of sodium-proton antiporter, LysR family
 
CRON 2.
otr
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
*
Shewanella sp ANA-3

Site:
position = -30
score = 5.51799
sequence = CCTCGGTACTGCCGAGG

Gene: Shewana3_3690: Octaheme tetrathionate reductase
*
Shewanella sp MR-4

Site:
position = -30
score = 5.87879
sequence = CCTCGGTATTGCCGAGG

Gene: Shewmr4_3513: Octaheme tetrathionate reductase
*
Shewanella sp MR-7

Site:
position = -30
score = 5.62742
sequence = CCTCGGTATCGCCGAGG

Gene: Shewmr7_0439: Octaheme tetrathionate reductase
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Octaheme tetrathionate reductase
 
CRON 3.
ccoH
*
Shewanella oneidensis MR-1

Site:
position = -88
score = 5.59951
sequence = CCTCGATAACCTCGAGG

Gene: SO_2360: Cbb3-type cytochrome oxidase assembly protein
*
Shewanella putrefaciens CN-32

Site:
position = -86
score = 5.49008
sequence = CCTCGAGAGTATCGAGG

Gene: Sputcn32_1955: Cbb3-type cytochrome oxidase assembly protein
*
Shewanella sp W3-18-1

Site:
position = -86
score = 5.49008
sequence = CCTCGAGAGTATCGAGG

Gene: Sputw3181_2050: Cbb3-type cytochrome oxidase assembly protein
*
Shewanella sp ANA-3

Site:
position = -88
score = 5.62742
sequence = CCTCGATAACGTCGAGG

Gene: Shewana3_2111: Cbb3-type cytochrome oxidase assembly protein
*
Shewanella sp MR-4

Site:
position = -88
score = 5.62742
sequence = CCTCGATAACGTCGAGG

Gene: Shewmr4_2010: Cbb3-type cytochrome oxidase assembly protein
*
Shewanella sp MR-7

Site:
position = -88
score = 5.62742
sequence = CCTCGATAACGTCGAGG

Gene: Shewmr7_1965: Cbb3-type cytochrome oxidase assembly protein
*
Shewanella baltica OS155

Site:
position = -88
score = 5.44471
sequence = CCTCGAAGACTTCGAGG

Gene: Sbal_2205: Cbb3-type cytochrome oxidase assembly protein
 
Shewanella denitrificans OS217

Gene: Sden_1847: Cbb3-type cytochrome oxidase assembly protein
*
Shewanella frigidimarina NCIMB 400

Site:
position = -94
score = 5.85088
sequence = CCTCGAGATTATCGAGG

Gene: Sfri_2014: Cbb3-type cytochrome oxidase assembly protein
 
Shewanella amazonensis SB2B

Gene: Sama_1795: Cbb3-type cytochrome oxidase assembly protein
 
Shewanella loihica PV-4

Gene: Shew_1989: Cbb3-type cytochrome oxidase assembly protein
*
Shewanella pealeana ATCC 700345

Site:
position = -115
score = 5.29804
sequence = CCTCGTTAACAACGAGG

Gene: Spea_2218: Cbb3-type cytochrome oxidase assembly protein
*
Shewanella halifaxensis HAW-EB4

Site:
position = -114
score = 5.34183
sequence = CCTCGTCATTAACGAGG

Gene: Shal_2201: Cbb3-type cytochrome oxidase assembly protein
*
Shewanella piezotolerans WP3

Site:
position = -103
score = 4.91157
sequence = CCTCGTCACTTACGAGG

Gene: swp_2576: Cbb3-type cytochrome oxidase assembly protein
*
Shewanella sediminis HAW-EB3

Site:
position = -88
score = 5.58451
sequence = CCTCGATCTTATCGAGG

Gene: Ssed_2215: Cbb3-type cytochrome oxidase assembly protein
*
Shewanella woodyi ATCC 51908

Site:
position = -88
score = 5.22371
sequence = CCTCGATCGTATCGAGG

Gene: Swoo_2421: Cbb3-type cytochrome oxidase assembly protein
Cbb3-type cytochrome oxidase assembly protein
ccoI
 
Shewanella oneidensis MR-1

Gene: SO_2359: Cbb3-type cytochrome oxidase, copper translocating P-ATPase
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1954: Cbb3-type cytochrome oxidase, copper translocating P-ATPase
 
Shewanella sp W3-18-1

Gene: Sputw3181_2051: Cbb3-type cytochrome oxidase, copper translocating P-ATPase
 
Shewanella sp ANA-3

Gene: Shewana3_2112: Cbb3-type cytochrome oxidase, copper translocating P-ATPase
 
Shewanella sp MR-4

Gene: Shewmr4_2011: Cbb3-type cytochrome oxidase, copper translocating P-ATPase
 
Shewanella sp MR-7

Gene: Shewmr7_1964: Cbb3-type cytochrome oxidase, copper translocating P-ATPase
 
Shewanella baltica OS155

Gene: Sbal_2206: Cbb3-type cytochrome oxidase, copper translocating P-ATPase
 
Shewanella denitrificans OS217

Gene: Sden_1846: Cbb3-type cytochrome oxidase, copper translocating P-ATPase
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2015: Cbb3-type cytochrome oxidase, copper translocating P-ATPase
 
Shewanella amazonensis SB2B

Gene: Sama_1796: Cbb3-type cytochrome oxidase, copper translocating P-ATPase
 
Shewanella loihica PV-4

Gene: Shew_1990: Cbb3-type cytochrome oxidase, copper translocating P-ATPase
 
Shewanella pealeana ATCC 700345

Gene: Spea_2219: Cbb3-type cytochrome oxidase, copper translocating P-ATPase
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2202: Cbb3-type cytochrome oxidase, copper translocating P-ATPase
 
Shewanella piezotolerans WP3

Gene: swp_2577: Cbb3-type cytochrome oxidase, copper translocating P-ATPase
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2216: Cbb3-type cytochrome oxidase, copper translocating P-ATPase
 
Shewanella woodyi ATCC 51908

Gene: Swoo_2420: Cbb3-type cytochrome oxidase, copper translocating P-ATPase
Cbb3-type cytochrome oxidase, copper translocating P-ATPase
ccoS
 
Shewanella oneidensis MR-1

Gene: SO_2358: Cbb3-type cytochrome oxidase assembly protein
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1953: Cbb3-type cytochrome oxidase assembly protein
 
Shewanella sp W3-18-1

Gene: Sputw3181_2052: Cbb3-type cytochrome oxidase assembly protein
 
Shewanella sp ANA-3

Gene: Shewana3_2113: Cbb3-type cytochrome oxidase assembly protein
 
Shewanella sp MR-4

Gene: Shewmr4_2012: Cbb3-type cytochrome oxidase assembly protein
 
Shewanella sp MR-7

Gene: Shewmr7_1963: Cbb3-type cytochrome oxidase assembly protein
 
Shewanella baltica OS155

Gene: Sbal_2207: Cbb3-type cytochrome oxidase assembly protein
 
Shewanella denitrificans OS217

Gene: Sden_1845: Cbb3-type cytochrome oxidase assembly protein
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2016: Cbb3-type cytochrome oxidase assembly protein
 
Shewanella amazonensis SB2B

Gene: Sama_1797: Cbb3-type cytochrome oxidase assembly protein
 
Shewanella loihica PV-4

Gene: Shew_1991: Cbb3-type cytochrome oxidase assembly protein
 
Shewanella pealeana ATCC 700345

Gene: Spea_2220: Cbb3-type cytochrome oxidase assembly protein
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2203: Cbb3-type cytochrome oxidase assembly protein
 
Shewanella piezotolerans WP3

Gene: swp_2578: Cbb3-type cytochrome oxidase assembly protein
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2217: Cbb3-type cytochrome oxidase assembly protein
 
Shewanella woodyi ATCC 51908

Gene: Swoo_2419: Cbb3-type cytochrome oxidase assembly protein
Cbb3-type cytochrome oxidase assembly protein
SO2357
 
Shewanella oneidensis MR-1

Gene: SO_2357: Integral membrane protein
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1952: Integral membrane protein
 
Shewanella sp W3-18-1

Gene: Sputw3181_2053: Integral membrane protein
 
Shewanella sp ANA-3

Gene: Shewana3_2114: Integral membrane protein
 
Shewanella sp MR-4

Gene: Shewmr4_2013: Integral membrane protein
 
Shewanella sp MR-7

Gene: Shewmr7_1962: Integral membrane protein
 
Shewanella baltica OS155

Gene: Sbal_2208: Integral membrane protein
 
Shewanella denitrificans OS217

Gene: Sden_1844: Integral membrane protein
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2017: Integral membrane protein
 
Shewanella amazonensis SB2B

Gene: Sama_1798: Integral membrane protein
 
Shewanella loihica PV-4

Gene: Shew_1992: Integral membrane protein
 
Shewanella pealeana ATCC 700345

Gene: Spea_2221: Integral membrane protein
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2204: Integral membrane protein
 
Shewanella piezotolerans WP3

Gene: swp_2579: Integral membrane protein
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2218: Integral membrane protein
 
Shewanella woodyi ATCC 51908

Gene: Swoo_2418: Integral membrane protein
Integral membrane protein
fnr
 
Shewanella oneidensis MR-1

Gene: SO_2356: Fumarate and nitrate reduction regulatory protein, Crp family
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1951: Fumarate and nitrate reduction regulatory protein, Crp family
 
Shewanella sp W3-18-1

Gene: Sputw3181_2054: Fumarate and nitrate reduction regulatory protein, Crp family
 
Shewanella sp ANA-3

Gene: Shewana3_2115: Fumarate and nitrate reduction regulatory protein, Crp family
 
Shewanella sp MR-4

Gene: Shewmr4_2014: Fumarate and nitrate reduction regulatory protein, Crp family
 
Shewanella sp MR-7

Gene: Shewmr7_1961: Fumarate and nitrate reduction regulatory protein, Crp family
 
Shewanella baltica OS155

Gene: Sbal_2209: Fumarate and nitrate reduction regulatory protein, Crp family
 
Shewanella denitrificans OS217

Gene: Sden_1843: Fumarate and nitrate reduction regulatory protein, Crp family
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2018: Fumarate and nitrate reduction regulatory protein, Crp family
 
Shewanella amazonensis SB2B

Gene: Sama_1799: Fumarate and nitrate reduction regulatory protein, Crp family
 
Shewanella loihica PV-4

Gene: Shew_1993: Fumarate and nitrate reduction regulatory protein, Crp family
 
Shewanella pealeana ATCC 700345

Gene: Spea_2222: Fumarate and nitrate reduction regulatory protein, Crp family
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2205: Fumarate and nitrate reduction regulatory protein, Crp family
 
Shewanella piezotolerans WP3

Gene: swp_2580: Fumarate and nitrate reduction regulatory protein, Crp family
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2219: Fumarate and nitrate reduction regulatory protein, Crp family
 
Shewanella woodyi ATCC 51908

Gene: Swoo_2417: Fumarate and nitrate reduction regulatory protein, Crp family
Fumarate and nitrate reduction regulatory protein, Crp family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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