Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GabR - Enterobacteriales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Gamma-aminobutyrate utilization
Effector: Gamma-aminobutyric acid
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Citrobacter koseri ATCC BAA-895
Edwardsiella tarda EIB202
Enterobacter sp. 638
Erwinia amylovora ATCC 49946 4 1
Erwinia carotovora subsp. atroseptica SCRI1043 2 1
Escherichia coli str. K-12 substr. MG1655
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 1 1
Photorhabdus luminescens subsp. laumondii TTO1
Proteus mirabilis HI4320
Salmonella typhimurium LT2
Serratia proteamaculans 568 2 1
Yersinia pestis KIM 4 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
gabT
 
Citrobacter koseri ATCC BAA-895

Gene: CKO_04884: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638

Gene: Ent638_3864: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
*
Erwinia amylovora ATCC 49946

Site:
position = -181
score = 10.3605
sequence = TTGGTTCC-(15)-CTGGCTCT-(7)-AAAACCCC

Gene: EAM_2305: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
*
Erwinia carotovora subsp. atroseptica SCRI1043

Site:
position = -145
score = 12.1375
sequence = GTGGATCC-(15)-CTGGCACT-(7)-AGAACCAT

Gene: ECA2053: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
 
Escherichia coli str. K-12 substr. MG1655
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Site:
position = -118
score = 12.4408
sequence = TTGGATCC-(15)-TTGGTACT-(7)-AGGGCCAA

Gene: KPN_03825: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
*
Serratia proteamaculans 568

Site:
position = -128
score = 12.6672
sequence = TTGGATCC-(15)-CTGGCTCT-(7)-AGGGCCAC

Gene: Spro_4306: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
*
Yersinia pestis KIM

Site:
position = -155
score = 12.3687
sequence = TTGGCACC-(14)-TTGGCACT-(7)-AGGGCGAC

Gene: y1390: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
gbtD
 
Citrobacter koseri ATCC BAA-895
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946

Gene: EAM_2306: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
 
Erwinia carotovora subsp. atroseptica SCRI1043

Gene: ECA2055: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
 
Escherichia coli str. K-12 substr. MG1655
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
 
Serratia proteamaculans 568
 
Yersinia pestis KIM

Gene: y1391: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
gbtB
 
Citrobacter koseri ATCC BAA-895
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946

Gene: EAM_2307: Predicted gamma-aminobutyrate ABC transporter, permease component
 
Erwinia carotovora subsp. atroseptica SCRI1043

Gene: ECA2056: Predicted gamma-aminobutyrate ABC transporter, permease component
 
Escherichia coli str. K-12 substr. MG1655
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
 
Serratia proteamaculans 568
 
Yersinia pestis KIM

Gene: y1392: Predicted gamma-aminobutyrate ABC transporter, permease component
Predicted gamma-aminobutyrate ABC transporter, permease component
gbtC
 
Citrobacter koseri ATCC BAA-895
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946

Gene: EAM_2308: Predicted gamma-aminobutyrate ABC transporter, permease component
 
Erwinia carotovora subsp. atroseptica SCRI1043

Gene: ECA2057: Predicted gamma-aminobutyrate ABC transporter, permease component
 
Escherichia coli str. K-12 substr. MG1655
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
 
Serratia proteamaculans 568
 
Yersinia pestis KIM

Gene: y1393: Predicted gamma-aminobutyrate ABC transporter, permease component
Predicted gamma-aminobutyrate ABC transporter, permease component
gabD
 
Citrobacter koseri ATCC BAA-895
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043

Gene: ECA2054: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Escherichia coli str. K-12 substr. MG1655
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
 
Serratia proteamaculans 568

Gene: Spro_4305: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Yersinia pestis KIM
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD