Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GabR - Alcaligenaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Gamma-aminobutyrate utilization
Effector: Gamma-aminobutyric acid
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 7 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bordetella avium 197N 10 3
Bordetella bronchiseptica RB50 7 2
Bordetella petrii DSM 12804 7 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
gabT
*
Bordetella avium 197N

Site:
position = -138
score = 11.7731
sequence = TTGGTTC-(16)-GTGGTTC-(9)-GGGCCAT

Gene: BAV2548: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
*
Bordetella bronchiseptica RB50

Site:
position = -136
score = 11.7731
sequence = TTGGTTC-(16)-GTGGTTC-(9)-GGGCCAT

Gene: BB1807: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
*
Bordetella petrii DSM 12804

Site:
position = -143
score = 11.7731
sequence = TTGGTTC-(16)-GTGGTTC-(9)-GGGCCAT

Gene: Bpet3403: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
gabD
 
Bordetella avium 197N

Gene: BAV2549: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Bordetella bronchiseptica RB50

Gene: BB1806: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Bordetella petrii DSM 12804

Gene: Bpet3404: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
CRON 2.
dppA
*
Bordetella avium 197N

Site:
position = -356
score = 10.8137
sequence = GTGGCAC-(17)-TTGGATC-(8)-GTACCAA

Gene: BAV2195: ABC-type peptide transporter, periplasmic oligopeptide-binding protein
*
Bordetella bronchiseptica RB50

Site:
position = -418
score = 10.3435
sequence = GTGGCAC-(17)-TTGGACC-(8)-GTACCAA

Gene: BB1884: ABC-type peptide transporter, periplasmic oligopeptide-binding protein
*
Bordetella petrii DSM 12804

Site:
position = -285
score = 10.3435
sequence = GTGGCAC-(17)-TTGGACC-(8)-GTACCAA

Gene: Bpet3079: ABC-type peptide transporter, periplasmic oligopeptide-binding protein
ABC-type peptide transporter, periplasmic oligopeptide-binding protein
dppB
 
Bordetella avium 197N

Gene: BAV2196: ABC-type peptide transport system permease protein
 
Bordetella bronchiseptica RB50

Gene: BB1883: ABC-type peptide transport system permease protein
 
Bordetella petrii DSM 12804

Gene: Bpet3080: ABC-type peptide transport system permease protein
ABC-type peptide transport system permease protein
dppC
 
Bordetella avium 197N

Gene: BAV2197: ABC-type peptide transport system permease protein
 
Bordetella bronchiseptica RB50

Gene: BB1882: ABC-type peptide transport system permease protein
 
Bordetella petrii DSM 12804

Gene: Bpet3081: ABC-type peptide transport system permease protein
ABC-type peptide transport system permease protein
dppD
 
Bordetella avium 197N

Gene: BAV2198: ABC-type peptide transporter, ATP-binding protein
 
Bordetella bronchiseptica RB50

Gene: BB1881: ABC-type peptide transporter, ATP-binding protein
 
Bordetella petrii DSM 12804

Gene: Bpet3082: ABC-type peptide transporter, ATP-binding protein
ABC-type peptide transporter, ATP-binding protein
gabT2
 
Bordetella avium 197N

Gene: BAV2199: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
 
Bordetella bronchiseptica RB50

Gene: BB1880: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
 
Bordetella petrii DSM 12804

Gene: Bpet3083: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
 
CRON 3.
argE
*
Bordetella avium 197N

Site:
position = -89
score = 9.94299
sequence = GTGGCTA-(16)-CTGGCTA-(9)-GGGCCAG

Gene: BAV0460: Acetylornithine deacetylase (EC 3.5.1.16)
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804
Acetylornithine deacetylase (EC 3.5.1.16)
BAV0461
 
Bordetella avium 197N

Gene: BAV0461: aminoglycoside phosphotransferase
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804
aminoglycoside phosphotransferase
gabT3
 
Bordetella avium 197N

Gene: BAV0462: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD