Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GabR - Ralstonia

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Gamma-aminobutyrate utilization
Effector: Gamma-aminobutyric acid
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Cupriavidus taiwanensis 7 1
Ralstonia eutropha H16 2 1
Ralstonia eutropha JMP134
Ralstonia metallidurans CH34 6 2
Ralstonia pickettii 12J 6 2
Ralstonia solanacearum GMI1000 6 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
argE
*
Cupriavidus taiwanensis

Site:
position = -172
score = 8.96806
sequence = AGTGGCTC-(15)-ATATGGAC-(8)-GGTACCAA

Gene: RALTA_A1417: Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase family
 
Ralstonia eutropha H16
 
Ralstonia eutropha JMP134
*
Ralstonia metallidurans CH34

Site:
position = -112
score = 8.96806
sequence = AGTGGCTC-(15)-ATATGGAC-(8)-GGTACCAA

Gene: Rmet_1610: Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase family
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase family
ddpA
 
Cupriavidus taiwanensis

Gene: RALTA_A1418: ABC-type peptide transport system, permease component
 
Ralstonia eutropha H16
 
Ralstonia eutropha JMP134
*
Ralstonia metallidurans CH34

Site:
position = -34
score = 7.11313
sequence = CTTGCTTC-(15)-AGGGATTC-(8)-GGGGCAAG

Gene: Rmet_1614: ABC-type peptide transport system, permease component
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
ABC-type peptide transport system, permease component
dppB
 
Cupriavidus taiwanensis

Gene: RALTA_A1419: ABC-type peptide transport system, permease component
 
Ralstonia eutropha H16
 
Ralstonia eutropha JMP134
 
Ralstonia metallidurans CH34

Gene: Rmet_1615: ABC-type peptide transport system, permease component
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
ABC-type peptide transport system, permease component
dppC
 
Cupriavidus taiwanensis

Gene: RALTA_A1420: ABC-type peptide transport system, periplasmic component
 
Ralstonia eutropha H16
 
Ralstonia eutropha JMP134
 
Ralstonia metallidurans CH34

Gene: Rmet_1616: ABC-type peptide transport system, periplasmic component
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
ABC-type peptide transport system, periplasmic component
dppD
 
Cupriavidus taiwanensis

Gene: RALTA_A1421: ABC-type peptide transport system, ATP-binding component
 
Ralstonia eutropha H16
 
Ralstonia eutropha JMP134
 
Ralstonia metallidurans CH34

Gene: Rmet_1617: ABC-type peptide transport system, ATP-binding component
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
ABC-type peptide transport system, ATP-binding component
gabT
 
Cupriavidus taiwanensis

Gene: RALTA_A1422: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
*
Ralstonia eutropha H16

Site:
position = -134
score = 9.71274
sequence = ATTGGCAC-(15)-AGCGGTAC-(9)-GGGCCAAG

Gene: H16_B0981: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
 
Ralstonia eutropha JMP134
 
Ralstonia metallidurans CH34

Gene: Rmet_1618: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
*
Ralstonia pickettii 12J

Site:
position = -102
score = 12.5272
sequence = AGTGGTTC-(15)-ATTGGGTC-(10)-GAGCCAAT

Gene: Rpic_3721: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
*
Ralstonia solanacearum GMI1000

Site:
position = -97
score = 13.1432
sequence = ATTGGCTC-(15)-ATTGGGTC-(10)-GGGCCAAT

Gene: RSc0029: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
gabD
 
Cupriavidus taiwanensis

Gene: RALTA_A1423: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Ralstonia eutropha H16

Gene: H16_B0982: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Ralstonia eutropha JMP134

Gene: Reut_C6272: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Ralstonia metallidurans CH34

Gene: Rmet_4942: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 2
Ralstonia pickettii 12J

Gene: Rpic_3722: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)

Gene: Rpic_4318: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Ralstonia solanacearum GMI1000

Gene: RSc0028: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
CRON 2.
gbtA
 
Cupriavidus taiwanensis
 
Ralstonia eutropha H16
 
Ralstonia eutropha JMP134
 
Ralstonia metallidurans CH34
*
Ralstonia pickettii 12J

Site:
position = -210
score = 12.4578
sequence = AATGGCTC-(15)-ATTGGGTC-(8)-AGAACAAT

Gene: Rpic_1467: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component
*
Ralstonia solanacearum GMI1000

Site:
position = -131
score = 12.4399
sequence = AATGGCTC-(15)-ATTGGGTC-(8)-AAGACCAT

Gene: RS02922: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component
Predicted gamma-aminobutyrate ABC transporter, ATP-binding component
gbtD
 
Cupriavidus taiwanensis
 
Ralstonia eutropha H16
 
Ralstonia eutropha JMP134
 
Ralstonia metallidurans CH34
 
Ralstonia pickettii 12J

Gene: Rpic_1468: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
 
Ralstonia solanacearum GMI1000

Gene: RS02921: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
gbtB
 
Cupriavidus taiwanensis
 
Ralstonia eutropha H16
 
Ralstonia eutropha JMP134
 
Ralstonia metallidurans CH34
 
Ralstonia pickettii 12J

Gene: Rpic_1469: Predicted gamma-aminobutyrate ABC transporter, permease component
 
Ralstonia solanacearum GMI1000

Gene: RS02920: Predicted gamma-aminobutyrate ABC transporter, permease component
Predicted gamma-aminobutyrate ABC transporter, permease component
gbtC
 
Cupriavidus taiwanensis
 
Ralstonia eutropha H16
 
Ralstonia eutropha JMP134
 
Ralstonia metallidurans CH34
 
Ralstonia pickettii 12J

Gene: Rpic_1470: Predicted gamma-aminobutyrate ABC transporter, permease component
 
Ralstonia solanacearum GMI1000

Gene: RS02919: Predicted gamma-aminobutyrate ABC transporter, permease component
Predicted gamma-aminobutyrate ABC transporter, permease component
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD