Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Bamb_5788 - Burkholderia

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 4 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Burkholderia cepacia AMMD 1 1
Burkholderia glumae BGR1 3 2
Burkholderia mallei ATCC 23344
Burkholderia phymatum STM815
Burkholderia pseudomallei K96243
Burkholderia sp. 383 2 1
Burkholderia vietnamiensis G4
Burkholderia xenovorans LB400
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF01370
*
Burkholderia cepacia AMMD

Site:
position = -163
score = 12.6267
sequence = GTATGGACCAGT-(12)-TCTTGGCACTTA-(3)-GATAGGACATGA

Gene: Bamb_5787: NAD-dependent epimerase/dehydratase
*
Burkholderia glumae BGR1

Site:
position = -156
score = 11.9018
sequence = CCATGTCCTGGT-(12)-ATTTGGACCTTA-(1)-GGCGGGCCATCG

Gene: bglu_1g30110: NAD-dependent epimerase/dehydratase
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815

Gene: Bphy_5347: NAD-dependent epimerase/dehydratase
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
NAD-dependent epimerase/dehydratase
 
CRON 2.
PF00583
 
Burkholderia cepacia AMMD
*
Burkholderia glumae BGR1

Site:
position = -92
score = 10.4332
sequence = CGATGTCCTAGC-(12)-TTCTGGCTCTGT-(2)-GCCGTGACGTGG

Gene: bglu_2g19120: GCN5-related N-acetyltransferase
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815
 
Burkholderia pseudomallei K96243
*
Burkholderia sp. 383

Site:
position = -88
score = 12.6847
sequence = TCATGTCCCAGT-(12)-TTTTGGACCTTC-(2)-GATACGCCATCC

Gene: Bcep18194_B3075: GCN5-related N-acetyltransferase
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
GCN5-related N-acetyltransferase
PF02525
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1

Gene: bglu_2g19110: FMN-dependent NADH-azoreductase
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383

Gene: Bcep18194_B3076: FMN-dependent NADH-azoreductase
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
FMN-dependent NADH-azoreductase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD