Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog H16_B1411 - Ralstonia

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 3 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Cupriavidus taiwanensis
Ralstonia eutropha H16 6 2
Ralstonia eutropha JMP134 2 1
Ralstonia metallidurans CH34
Ralstonia pickettii 12J
Ralstonia solanacearum GMI1000
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF00583
 
Cupriavidus taiwanensis

Gene: RALTA_B1549: GCN5-related N-acetyltransferase
*
Ralstonia eutropha H16

Site:
position = -93
score = 9.51881
sequence = CGATGGCCTAGT-(12)-ACATGTGCCTGT-(2)-ACTGTGTCATCG

Gene: H16_B1407: GCN5-related N-acetyltransferase
 
Ralstonia eutropha JMP134

Gene: Reut_A3274: GCN5-related N-acetyltransferase
 
Ralstonia metallidurans CH34

Gene: Rmet_3439: GCN5-related N-acetyltransferase
 
Ralstonia pickettii 12J

Gene: Rpic_3957: GCN5-related N-acetyltransferase
 
Ralstonia solanacearum GMI1000
GCN5-related N-acetyltransferase
PF05368
 
Cupriavidus taiwanensis
 
Ralstonia eutropha H16

Gene: H16_B1406: NmrA-like domain
*
Ralstonia eutropha JMP134

Site:
position = -157
score = 11.1028
sequence = ACTTGGCCTAGT-(12)-TCTTGGCCCTTA-(2)-CATAGGGCATGA

Gene: Reut_A1579: NmrA-like domain
 
Ralstonia metallidurans CH34
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
NmrA-like domain
PF02627
 
Cupriavidus taiwanensis

Gene: RALTA_A1404: Carboxymuconolactone decarboxylase
 
Ralstonia eutropha H16

Gene: H16_B1405: Carboxymuconolactone decarboxylase
 
Ralstonia eutropha JMP134
 
Ralstonia metallidurans CH34
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
Carboxymuconolactone decarboxylase
PF07883
 
Cupriavidus taiwanensis

Gene: RALTA_A1405: Cupin 2, conserved barrel
 
Ralstonia eutropha H16

Gene: H16_B1404: Cupin 2, conserved barrel
 
Ralstonia eutropha JMP134

Gene: Reut_A1578: Cupin 2, conserved barrel
 
Ralstonia metallidurans CH34
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
Cupin 2, conserved barrel
 
CRON 2.
h16_B1410
 
Cupriavidus taiwanensis
*
Ralstonia eutropha H16

Site:
position = -163
score = 9.20808
sequence = CGATGGCCCAGT-(12)-ACATGTGCCTGT-(2)-ACTGAGTCATCG

Gene: H16_B1410: Non-heme chloroperoxidase
 
Ralstonia eutropha JMP134
 
Ralstonia metallidurans CH34
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
Non-heme chloroperoxidase
h16_B1409
 
Cupriavidus taiwanensis
 
Ralstonia eutropha H16

Gene: H16_B1409: amidase related to nicotinamidase
 
Ralstonia eutropha JMP134
 
Ralstonia metallidurans CH34
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
amidase related to nicotinamidase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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