Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NagR - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: N-acetylglucosamine utilization
Effector: N-acetylglucosamine
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 105 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 16 6
Shewanella putrefaciens CN-32 7 3
Shewanella sp W3-18-1 6 3
Shewanella sp ANA-3 19 8
Shewanella sp MR-4 20 9
Shewanella sp MR-7 20 9
Shewanella baltica OS155 12 7
Shewanella denitrificans OS217 11 7
Shewanella frigidimarina NCIMB 400
Shewanella amazonensis SB2B 10 4
Shewanella loihica PV-4 8 5
Shewanella pealeana ATCC 700345 10 7
Shewanella halifaxensis HAW-EB4 9 6
Shewanella piezotolerans WP3 19 10
Shewanella sediminis HAW-EB3 9 6
Shewanella woodyi ATCC 51908 19 11
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
chiA
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
*
Shewanella sp ANA-3

Site:
position = -214
score = 6.63441
sequence = AATGACAACGTTGTCATT

Gene: Shewana3_2984: Chitinase (EC 3.2.1.14)
*
Shewanella sp MR-4

Site:
position = -212
score = 6.63441
sequence = AATGACAACGTTGTCATT

Gene: Shewmr4_2805: Chitinase (EC 3.2.1.14)
*
Shewanella sp MR-7

Site:
position = -212
score = 6.63441
sequence = AATGACAACGTTGTCATT

Gene: Shewmr7_2888: Chitinase (EC 3.2.1.14)
*
Shewanella baltica OS155

Site:
position = -221
score = 6.63441
sequence = AATGACAACGTTGTCATT

Gene: Sbal_3083: Chitinase (EC 3.2.1.14)
*
Shewanella denitrificans OS217

Site:
position = -212
score = 6.43696
sequence = AATGACAACGCTGTCATT

Gene: Sden_2136: Chitinase (EC 3.2.1.14)
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
*
Shewanella piezotolerans WP3

Site:
position = -249
score = 6.43696
sequence = AATGACAACGCTGTCATT

Gene: swp_0647: Chitinase (EC 3.2.1.14)
 
Shewanella sediminis HAW-EB3
*
Shewanella woodyi ATCC 51908

Site:
position = -306
score = 6.35414
sequence = GATGACAGCGTTGTCATC

Gene: Swoo_1100: Chitinase (EC 3.2.1.14)
Chitinase (EC 3.2.1.14)
 
CRON 2.
cdxA
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
*
Shewanella baltica OS155

Site:
position = 573
score = 5.93576
sequence = AATGACAGCGCTGTCACT

Gene: Sbal_2491: Chitodextrinase precursor (EC 3.2.1.14)
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
*
Shewanella woodyi ATCC 51908

Site:
position = 567
score = 6.09181
sequence = AATGACAGCGTTGTCACC

Gene: Swoo_2719: Chitodextrinase precursor (EC 3.2.1.14)
Chitodextrinase precursor (EC 3.2.1.14)
 
CRON 3.
nagP
*
Shewanella oneidensis MR-1

Site:
position = -175
score = 6.05506
sequence = AATGACAGCGTTGTCTTT

Gene: SO_3503: N-acetylglucosamine transporter, NagP
*
Shewanella putrefaciens CN-32

Site:
position = -179
score = 6.05506
sequence = AATGACAGCGTTGTCTTT

Gene: Sputcn32_1080: N-acetylglucosamine transporter, NagP
*
Shewanella sp W3-18-1

Site:
position = -179
score = 6.05506
sequence = AATGACAGCGTTGTCTTT

Gene: Sputw3181_3084: N-acetylglucosamine transporter, NagP
*
Shewanella sp ANA-3

Site:
position = -177
score = 6.05506
sequence = AATGACAGCGTTGTCTTT

Gene: Shewana3_3110: N-acetylglucosamine transporter, NagP
*
Shewanella sp MR-4

Site:
position = -178
score = 6.05506
sequence = AATGACAGCGTTGTCTTT

Gene: Shewmr4_2931: N-acetylglucosamine transporter, NagP
*
Shewanella sp MR-7

Site:
position = -178
score = 6.05506
sequence = AATGACAGCGTTGTCTTT

Gene: Shewmr7_3013: N-acetylglucosamine transporter, NagP
*
Shewanella baltica OS155

Site:
position = -179
score = 6.05506
sequence = AATGACAGCGTTGTCTTT

Gene: Sbal_1088: N-acetylglucosamine transporter, NagP
*
Shewanella denitrificans OS217

Site:
position = -138
score = 5.55296
sequence = AATGACAGCGTTGTCTTA

Gene: Sden_2702: N-acetylglucosamine transporter, NagP
 
Shewanella frigidimarina NCIMB 400
*
Shewanella amazonensis SB2B

Site:
position = -167
score = 6.05506
sequence = AATGACAGCGTTGTCTTT

Gene: Sama_0948: N-acetylglucosamine transporter, NagP
*
Shewanella loihica PV-4

Site:
position = -186
score = 6.05506
sequence = AATGACAGCGTTGTCTTT

Gene: Shew_1119: N-acetylglucosamine transporter, NagP
*
Shewanella pealeana ATCC 700345

Site:
position = -198
score = 6.05506
sequence = AATGACAGCGTTGTCTTT

Gene: Spea_1104: N-acetylglucosamine transporter, NagP
*
Shewanella halifaxensis HAW-EB4

Site:
position = -199
score = 6.05506
sequence = AATGACAGCGTTGTCTTT

Gene: Shal_1152: N-acetylglucosamine transporter, NagP
*
Shewanella piezotolerans WP3

Site:
position = -177
score = 6.05506
sequence = AATGACAGCGTTGTCTTT

Gene: swp_3698: N-acetylglucosamine transporter, NagP
*
Shewanella sediminis HAW-EB3

Site:
position = -168
score = 6.05506
sequence = AATGACAGCGTTGTCTTT

Gene: Ssed_1215: N-acetylglucosamine transporter, NagP
*
Shewanella woodyi ATCC 51908

Site:
position = -172
score = 6.05506
sequence = AATGACAGCGTTGTCTTT

Gene: Swoo_1315: N-acetylglucosamine transporter, NagP
N-acetylglucosamine transporter, NagP
 
CRON 4.
omp_nag
*
Shewanella oneidensis MR-1

Site:
position = -74
score = 6.16766
sequence = CATGACAGCGTTGTCATT

Gene: SO_3514: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
*
Shewanella putrefaciens CN-32

Site:
position = -75
score = 6.16766
sequence = CATGACAGCGTTGTCATT

Gene: Sputcn32_1074: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
*
Shewanella sp W3-18-1

Site:
position = -75
score = 6.16766
sequence = CATGACAGCGTTGTCATT

Gene: Sputw3181_3091: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
*
Shewanella sp ANA-3

Site:
position = -74
score = 6.16766
sequence = CATGACAGCGTTGTCATT

Gene: Shewana3_3121: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
*
Shewanella sp MR-4

Site:
position = -74
score = 6.16766
sequence = CATGACAGCGTTGTCATT

Gene: Shewmr4_2942: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
*
Shewanella sp MR-7

Site:
position = -348
score = 5.13196
sequence = GCCGACAGCGTTGTCAGC

Site:
position = -74
score = 6.16766
sequence = CATGACAGCGTTGTCATT

Gene: Shewmr7_3024: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
 
Shewanella baltica OS155
*
Shewanella denitrificans OS217

Site:
position = -76
score = 6.16766
sequence = CATGACAGCGTTGTCATT

Gene: Sden_2708: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
 
Shewanella frigidimarina NCIMB 400
*
Shewanella amazonensis SB2B

Site:
position = -75
score = 6.16766
sequence = CATGACAGCGTTGTCATT

Gene: Sama_0938: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
*
Shewanella loihica PV-4

Site:
position = -76
score = 6.16766
sequence = CATGACAGCGTTGTCATT

Gene: Shew_1112: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
*
Shewanella pealeana ATCC 700345

Site:
position = -77
score = 6.16766
sequence = CATGACAGCGTTGTCATT

Gene: Spea_1097: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
*
Shewanella halifaxensis HAW-EB4

Site:
position = -78
score = 6.16766
sequence = CATGACAGCGTTGTCATT

Gene: Shal_1145: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
*
Shewanella piezotolerans WP3

Site:
position = -77
score = 6.16766
sequence = CATGACAGCGTTGTCATT

Gene: swp_3712: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
*
Shewanella sediminis HAW-EB3

Site:
position = -78
score = 6.16766
sequence = CATGACAGCGTTGTCATT

Gene: Ssed_1208: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
*
Shewanella woodyi ATCC 51908

Site:
position = -34
score = 6.16766
sequence = CATGACAGCGTTGTCATT

Gene: Swoo_1305: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
trpX
 
Shewanella oneidensis MR-1

Gene: SO_3513: Tryptophan halogenase
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3

Gene: Shewana3_3120: Tryptophan halogenase
 
Shewanella sp MR-4

Gene: Shewmr4_2941: Tryptophan halogenase
 
Shewanella sp MR-7

Gene: Shewmr7_3023: Tryptophan halogenase
 2
Shewanella baltica OS155

Gene: Sbal_1079: Tryptophan halogenase

Gene: Sbal_1078: Tryptophan halogenase
 
Shewanella denitrificans OS217

Gene: Sden_2707: Tryptophan halogenase
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B

Gene: Sama_0939: Tryptophan halogenase
 
Shewanella loihica PV-4

Gene: Shew_1113: Tryptophan halogenase
 
Shewanella pealeana ATCC 700345

Gene: Spea_1098: Tryptophan halogenase
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_1146: Tryptophan halogenase
 2
Shewanella piezotolerans WP3

Gene: swp_3710: Tryptophan halogenase

Gene: swp_3711: Tryptophan halogenase
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1209: Tryptophan halogenase
 3
Shewanella woodyi ATCC 51908

Gene: Swoo_1306: Tryptophan halogenase

Gene: Swoo_3937: Tryptophan halogenase

Gene: Swoo_3938: Tryptophan halogenase
Tryptophan halogenase
sapC
 
Shewanella oneidensis MR-1

Gene: SO_3512: Peptide transport system permease protein sapC (TC 3.A.1.5.5)
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3

Gene: Shewana3_3119: Peptide transport system permease protein sapC (TC 3.A.1.5.5)
 
Shewanella sp MR-4

Gene: Shewmr4_2940: Peptide transport system permease protein sapC (TC 3.A.1.5.5)
 
Shewanella sp MR-7

Gene: Shewmr7_3022: Peptide transport system permease protein sapC (TC 3.A.1.5.5)
 
Shewanella baltica OS155

Gene: Sbal_1077: Peptide transport system permease protein sapC (TC 3.A.1.5.5)
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B

Gene: Sama_0940: Peptide transport system permease protein sapC (TC 3.A.1.5.5)
*
Shewanella loihica PV-4

Site:
position = -374
score = 5.696
sequence = TATGACAACGCTGTCAAC

Gene: Shew_1114: Peptide transport system permease protein sapC (TC 3.A.1.5.5)
*
Shewanella pealeana ATCC 700345

Site:
position = -117
score = 6.13322
sequence = ATTGACAACGTTGTCACT

Gene: Spea_1099: Peptide transport system permease protein sapC (TC 3.A.1.5.5)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -149
score = 6.13322
sequence = ATTGACAACGTTGTCACT

Gene: Shal_1147: Peptide transport system permease protein sapC (TC 3.A.1.5.5)
 
Shewanella piezotolerans WP3

Gene: swp_3709: Peptide transport system permease protein sapC (TC 3.A.1.5.5)
*
Shewanella sediminis HAW-EB3

Site:
position = -293
score = 6.39555
sequence = GATGACAACGCTGTCATT

Site:
position = -139
score = 5.23531
sequence = TATGACAACGCTGTCAAA

Gene: Ssed_1210: Peptide transport system permease protein sapC (TC 3.A.1.5.5)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1307: Peptide transport system permease protein sapC (TC 3.A.1.5.5)
Peptide transport system permease protein sapC (TC 3.A.1.5.5)
pilM
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
*
Shewanella sp ANA-3

Site:
position = -294
score = 6.39555
sequence = AATGACAACGCTGTCATC

Gene: Shewana3_3117: homolog of type IV pilus assembly protein PilM
*
Shewanella sp MR-4

Site:
position = -294
score = 6.39555
sequence = AATGACAACGCTGTCATC

Gene: Shewmr4_2938: homolog of type IV pilus assembly protein PilM
*
Shewanella sp MR-7

Site:
position = -294
score = 6.39555
sequence = AATGACAACGCTGTCATC

Gene: Shewmr7_3020: homolog of type IV pilus assembly protein PilM
*
Shewanella baltica OS155

Site:
position = -304
score = 6.39555
sequence = AATGACAACGCTGTCATC

Gene: Sbal_1081: homolog of type IV pilus assembly protein PilM
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
*
Shewanella amazonensis SB2B

Site:
position = -282
score = 6.43696
sequence = AATGACAGCGTTGTCATT

Gene: Sama_0941: homolog of type IV pilus assembly protein PilM
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
*
Shewanella piezotolerans WP3

Site:
position = -277
score = 5.89345
sequence = TATGACAGCGTTGTCATC

Gene: swp_3707: homolog of type IV pilus assembly protein PilM
 
Shewanella sediminis HAW-EB3
*
Shewanella woodyi ATCC 51908

Site:
position = -311
score = 6.39555
sequence = AATGACAGCGTTGTCATC

Gene: Swoo_1309: homolog of type IV pilus assembly protein PilM
homolog of type IV pilus assembly protein PilM
mcp_nag
*
Shewanella oneidensis MR-1

Site:
position = -437
score = 4.99582
sequence = ACTGACAGCGTTGTTATA

Site:
position = -290
score = 6.39555
sequence = AATGACAACGCTGTCATC

Gene: SO_3510: N-acetylglucosamine regulated methyl-accepting chemotaxis protein
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3

Gene: Shewana3_3116: N-acetylglucosamine regulated methyl-accepting chemotaxis protein
 
Shewanella sp MR-4

Gene: Shewmr4_2937: N-acetylglucosamine regulated methyl-accepting chemotaxis protein
 
Shewanella sp MR-7

Gene: Shewmr7_3019: N-acetylglucosamine regulated methyl-accepting chemotaxis protein
 
Shewanella baltica OS155

Gene: Sbal_1082: N-acetylglucosamine regulated methyl-accepting chemotaxis protein
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B

Gene: Sama_0942: N-acetylglucosamine regulated methyl-accepting chemotaxis protein
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3

Gene: swp_3706: N-acetylglucosamine regulated methyl-accepting chemotaxis protein
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1310: N-acetylglucosamine regulated methyl-accepting chemotaxis protein
N-acetylglucosamine regulated methyl-accepting chemotaxis protein
hex
 
Shewanella oneidensis MR-1

Gene: SO_3509: Beta-hexosaminidase (EC 3.2.1.52)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1075: Beta-hexosaminidase (EC 3.2.1.52)
 
Shewanella sp W3-18-1

Gene: Sputw3181_3090: Beta-hexosaminidase (EC 3.2.1.52)
 
Shewanella sp ANA-3

Gene: Shewana3_3115: Beta-hexosaminidase (EC 3.2.1.52)
 
Shewanella sp MR-4

Gene: Shewmr4_2936: Beta-hexosaminidase (EC 3.2.1.52)
 
Shewanella sp MR-7

Gene: Shewmr7_3018: Beta-hexosaminidase (EC 3.2.1.52)
 
Shewanella baltica OS155
*
Shewanella denitrificans OS217

Site:
position = -243
score = 6.04205
sequence = ATTGACAACGCTGTCAAT

Gene: Sden_0553: Beta-hexosaminidase (EC 3.2.1.52)
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B

Gene: Sama_0943: Beta-hexosaminidase (EC 3.2.1.52)
 
Shewanella loihica PV-4

Gene: Shew_1115: Beta-hexosaminidase (EC 3.2.1.52)
*
Shewanella pealeana ATCC 700345

Site:
position = -334
score = 6.39555
sequence = AATGACAGCGTTGTCATC

Gene: Spea_1100: Beta-hexosaminidase (EC 3.2.1.52)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -344
score = 6.12625
sequence = CATGACAGCGTTGTCATC

Gene: Shal_1148: Beta-hexosaminidase (EC 3.2.1.52)
 
Shewanella piezotolerans WP3

Gene: swp_3705: Beta-hexosaminidase (EC 3.2.1.52)
*
Shewanella sediminis HAW-EB3

Site:
position = -572
score = 6.39555
sequence = AATGACAGCGTTGTCATC

Gene: Ssed_1211: Beta-hexosaminidase (EC 3.2.1.52)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1311: Beta-hexosaminidase (EC 3.2.1.52)
Beta-hexosaminidase (EC 3.2.1.52)
omp_nag2
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
*
Shewanella woodyi ATCC 51908

Site:
position = -36
score = 5.93486
sequence = TATGACAGCGTTGTCATT

Gene: Swoo_3939: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
duf81
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
*
Shewanella sp ANA-3

Site:
position = -66
score = 5.24922
sequence = TGTGACAACGCTGTCTTT

Gene: Shewana3_3118: protein of unknown function DUF81
*
Shewanella sp MR-4

Site:
position = -68
score = 5.01642
sequence = TGTGACAACGCTGTCCTT

Gene: Shewmr4_2939: protein of unknown function DUF81
*
Shewanella sp MR-7

Site:
position = -68
score = 5.24922
sequence = TGTGACAACGCTGTCTTT

Gene: Shewmr7_3021: protein of unknown function DUF81
*
Shewanella baltica OS155

Site:
position = -210
score = 6.39555
sequence = GATGACAGCGTTGTCATT

Site:
position = -64
score = 5.44667
sequence = TGTGACAACGTTGTCTTT

Gene: Sbal_1080: protein of unknown function DUF81
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
*
Shewanella piezotolerans WP3

Site:
position = -129
score = 5.3555
sequence = AATGACAACGCTGTCTAA

Gene: swp_3708: protein of unknown function DUF81
 
Shewanella sediminis HAW-EB3
*
Shewanella woodyi ATCC 51908

Site:
position = -92
score = 5.7374
sequence = TATGACAACGCTGTCAAT

Gene: Swoo_1308: protein of unknown function DUF81
protein of unknown function DUF81
 
CRON 5.
nagR
 
Shewanella oneidensis MR-1

Gene: SO_3516: Transcriptional regulator of N-acetylglucosamine utilization, LacI family
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1073: Transcriptional regulator of N-acetylglucosamine utilization, LacI family
 
Shewanella sp W3-18-1

Gene: Sputw3181_3092: Transcriptional regulator of N-acetylglucosamine utilization, LacI family
*
Shewanella sp ANA-3

Site:
position = -96
score = 5.13196
sequence = GCTGACAACGCTGTCGGC

Gene: Shewana3_3122: Transcriptional regulator of N-acetylglucosamine utilization, LacI family
*
Shewanella sp MR-4

Site:
position = -96
score = 5.13196
sequence = GCTGACAACGCTGTCGGC

Gene: Shewmr4_2943: Transcriptional regulator of N-acetylglucosamine utilization, LacI family
*
Shewanella sp MR-7

Site:
position = -96
score = 5.13196
sequence = GCTGACAACGCTGTCGGC

Gene: Shewmr7_3025: Transcriptional regulator of N-acetylglucosamine utilization, LacI family
 
Shewanella baltica OS155

Gene: Sbal_1071: Transcriptional regulator of N-acetylglucosamine utilization, LacI family
*
Shewanella denitrificans OS217

Site:
position = -301
score = 6.16766
sequence = AATGACAACGCTGTCATG

Gene: Sden_2709: Transcriptional regulator of N-acetylglucosamine utilization, LacI family
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B

Gene: Sama_0937: Transcriptional regulator of N-acetylglucosamine utilization, LacI family
 
Shewanella loihica PV-4

Gene: Shew_1111: Transcriptional regulator of N-acetylglucosamine utilization, LacI family
 
Shewanella pealeana ATCC 700345

Gene: Spea_1096: Transcriptional regulator of N-acetylglucosamine utilization, LacI family
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_1144: Transcriptional regulator of N-acetylglucosamine utilization, LacI family
 
Shewanella piezotolerans WP3

Gene: swp_3713: Transcriptional regulator of N-acetylglucosamine utilization, LacI family
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1207: Transcriptional regulator of N-acetylglucosamine utilization, LacI family
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1304: Transcriptional regulator of N-acetylglucosamine utilization, LacI family
Transcriptional regulator of N-acetylglucosamine utilization, LacI family
 
CRON 6.
SO0854
*
Shewanella oneidensis MR-1

Site:
position = -83
score = 5.66556
sequence = CATGACAACGTTGTCAAA

Gene: SO_0854: Type IV pilus biogenesis protein PilE
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
*
Shewanella sp ANA-3

Site:
position = -91
score = 5.43276
sequence = TATGACAACGTTGTCAAA

Gene: Shewana3_3424: Type IV pilus biogenesis protein PilE
*
Shewanella sp MR-4

Site:
position = -91
score = 5.43276
sequence = TATGACAACGTTGTCAAA

Gene: Shewmr4_0710: Type IV pilus biogenesis protein PilE
*
Shewanella sp MR-7

Site:
position = -91
score = 5.43276
sequence = TATGACAACGTTGTCAAA

Gene: Shewmr7_3312: Type IV pilus biogenesis protein PilE
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3

Gene: swp_4636: Type IV pilus biogenesis protein PilE
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Type IV pilus biogenesis protein PilE
SO0853
 
Shewanella oneidensis MR-1

Gene: SO_0853: Type IV fimbrial biogenesis protein FimT
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3

Gene: Shewana3_3425: Type IV fimbrial biogenesis protein FimT
 
Shewanella sp MR-4

Gene: Shewmr4_0709: Type IV fimbrial biogenesis protein FimT
 
Shewanella sp MR-7

Gene: Shewmr7_3313: Type IV fimbrial biogenesis protein FimT
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3

Gene: swp_4635: Type IV fimbrial biogenesis protein FimT
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Type IV fimbrial biogenesis protein FimT
SO0852
 
Shewanella oneidensis MR-1

Gene: SO_0852: Type IV fimbrial biogenesis protein PilV
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3

Gene: Shewana3_3426: Type IV fimbrial biogenesis protein PilV
 
Shewanella sp MR-4

Gene: Shewmr4_0708: Type IV fimbrial biogenesis protein PilV
 
Shewanella sp MR-7

Gene: Shewmr7_3314: Type IV fimbrial biogenesis protein PilV
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
*
Shewanella piezotolerans WP3

Site:
position = -164
score = 5.32738
sequence = AATGACATCGCTGTCACA

Gene: swp_4634: Type IV fimbrial biogenesis protein PilV
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Type IV fimbrial biogenesis protein PilV
SO0851
 
Shewanella oneidensis MR-1

Gene: SO_0851: prepilin-type cleavage/methylation-like protein
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3

Gene: Shewana3_3427: prepilin-type cleavage/methylation-like protein
 
Shewanella sp MR-4

Gene: Shewmr4_0707: prepilin-type cleavage/methylation-like protein
 
Shewanella sp MR-7

Gene: Shewmr7_3315: prepilin-type cleavage/methylation-like protein
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3

Gene: swp_4633: prepilin-type cleavage/methylation-like protein
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
prepilin-type cleavage/methylation-like protein
SO0850
 
Shewanella oneidensis MR-1

Gene: SO_0850: Type IV fimbrial biogenesis protein PilX
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3

Gene: Shewana3_3428: Type IV fimbrial biogenesis protein PilX
 
Shewanella sp MR-4

Gene: Shewmr4_0706: Type IV fimbrial biogenesis protein PilX
 
Shewanella sp MR-7

Gene: Shewmr7_3316: Type IV fimbrial biogenesis protein PilX
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3

Gene: swp_4632: Type IV fimbrial biogenesis protein PilX
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Type IV fimbrial biogenesis protein PilX
 
CRON 7.
pdaA
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
*
Shewanella woodyi ATCC 51908

Site:
position = -99
score = 5.55296
sequence = AATGACAGCGTTGTCTTA

Gene: Swoo_4312: Peptidoglycan N-acetylglucosamine deacetylase
Peptidoglycan N-acetylglucosamine deacetylase
 
CRON 8.
cbp
*
Shewanella oneidensis MR-1

Site:
position = -304
score = 5.55296
sequence = TTTGACAACGTTGTCTTT

Gene: SO_1072: Chitn and N-acetylglucosamine-binding protein A
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
*
Shewanella sp MR-4

Site:
position = -300
score = 5.3555
sequence = TTTGACAACGCTGTCTTT

Gene: Shewmr4_3027: Chitn and N-acetylglucosamine-binding protein A
*
Shewanella sp MR-7

Site:
position = -300
score = 5.15805
sequence = TTTGACAGCGCTGTCTTT

Gene: Shewmr7_0947: Chitn and N-acetylglucosamine-binding protein A
*
Shewanella baltica OS155

Site:
position = -309
score = 5.3555
sequence = TTTGACAGCGTTGTCTTT

Gene: Sbal_0896: Chitn and N-acetylglucosamine-binding protein A
*
Shewanella denitrificans OS217

Site:
position = -183
score = 5.15805
sequence = TTTGACAGCGCTGTCTTT

Gene: Sden_1030: Chitn and N-acetylglucosamine-binding protein A
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
*
Shewanella woodyi ATCC 51908

Site:
position = -311
score = 5.8576
sequence = ATTGACAGCGTTATCATT

Gene: Swoo_3879: Chitn and N-acetylglucosamine-binding protein A
Chitn and N-acetylglucosamine-binding protein A
 
CRON 9.
cbp2
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
*
Shewanella pealeana ATCC 700345

Site:
position = -39
score = 5.7374
sequence = TTTGACAGCGTTGTCATT

Gene: Spea_3159: putative chitn-binding protein, exported
 
Shewanella halifaxensis HAW-EB4
*
Shewanella piezotolerans WP3

Site:
position = -40
score = 5.93486
sequence = TATGACAGCGTTGTCATT

Gene: swp_3933: putative chitn-binding protein, exported
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
putative chitn-binding protein, exported
 
CRON 10.
chiA3
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
*
Shewanella piezotolerans WP3

Site:
position = -182
score = 5.23621
sequence = TGTGACAGCGCTGTCAAT

Gene: swp_2992: chitodextrinase
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
chitodextrinase
 
CRON 11.
nagB
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
*
Shewanella loihica PV-4

Site:
position = -119
score = 6.43696
sequence = AATGACAACGCTGTCATT

Gene: Shew_0815: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
*
Shewanella pealeana ATCC 700345

Site:
position = -182
score = 6.43696
sequence = AATGACAGCGTTGTCATT

Gene: Spea_0760: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -84
score = 6.43696
sequence = AATGACAGCGTTGTCATT

Gene: Shal_0813: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
*
Shewanella piezotolerans WP3

Site:
position = -91
score = 6.43696
sequence = AATGACAGCGTTGTCATT

Gene: swp_4289: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
*
Shewanella sediminis HAW-EB3

Site:
position = -84
score = 6.43696
sequence = AATGACAGCGTTGTCATT

Gene: Ssed_0844: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
*
Shewanella woodyi ATCC 51908

Site:
position = -190
score = 6.43696
sequence = AATGACAGCGTTGTCATT

Gene: Swoo_0943: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
 
CRON 12.
nagK
*
Shewanella oneidensis MR-1

Site:
position = -115
score = 6.43696
sequence = AATGACAACGCTGTCATT

Gene: SO_3507: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
*
Shewanella putrefaciens CN-32

Site:
position = -90
score = 6.39555
sequence = AATGACAACGCTGTCATC

Gene: Sputcn32_1076: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
*
Shewanella sp W3-18-1

Site:
position = -90
score = 6.39555
sequence = AATGACAACGCTGTCATC

Gene: Sputw3181_3089: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
*
Shewanella sp ANA-3

Site:
position = -114
score = 6.43696
sequence = AATGACAACGCTGTCATT

Gene: Shewana3_3114: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
*
Shewanella sp MR-4

Site:
position = -114
score = 6.43696
sequence = AATGACAACGCTGTCATT

Gene: Shewmr4_2935: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
*
Shewanella sp MR-7

Site:
position = -114
score = 6.43696
sequence = AATGACAACGCTGTCATT

Gene: Shewmr7_3017: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
*
Shewanella baltica OS155

Site:
position = -113
score = 6.43696
sequence = AATGACAACGCTGTCATT

Gene: Sbal_1084: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
*
Shewanella denitrificans OS217

Site:
position = -101
score = 6.43696
sequence = AATGACAACGCTGTCATT

Gene: Sden_2706: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
 
Shewanella frigidimarina NCIMB 400
*
Shewanella amazonensis SB2B

Site:
position = -105
score = 6.43696
sequence = AATGACAACGCTGTCATT

Gene: Sama_0944: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
*
Shewanella loihica PV-4

Site:
position = -106
score = 6.43696
sequence = AATGACAGCGTTGTCATT

Gene: Shew_1116: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
*
Shewanella pealeana ATCC 700345

Site:
position = -123
score = 6.43696
sequence = AATGACAACGCTGTCATT

Gene: Spea_1101: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -124
score = 6.43696
sequence = AATGACAACGCTGTCATT

Gene: Shal_1149: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
*
Shewanella piezotolerans WP3

Site:
position = -106
score = 6.43696
sequence = AATGACAACGCTGTCATT

Gene: swp_3703: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
*
Shewanella sediminis HAW-EB3

Site:
position = -106
score = 6.43696
sequence = AATGACAACGCTGTCATT

Gene: Ssed_1212: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
*
Shewanella woodyi ATCC 51908

Site:
position = -108
score = 6.43696
sequence = AATGACAACGCTGTCATT

Gene: Swoo_1312: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
nagB2
 
Shewanella oneidensis MR-1

Gene: SO_3506: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1077: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
 
Shewanella sp W3-18-1

Gene: Sputw3181_3088: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
 
Shewanella sp ANA-3

Gene: Shewana3_3113: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
 
Shewanella sp MR-4

Gene: Shewmr4_2934: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
 
Shewanella sp MR-7

Gene: Shewmr7_3016: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
 
Shewanella baltica OS155

Gene: Sbal_1085: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
 
Shewanella denitrificans OS217

Gene: Sden_2705: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B

Gene: Sama_0945: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
nagA
 
Shewanella oneidensis MR-1

Gene: SO_3505: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1078: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Shewanella sp W3-18-1

Gene: Sputw3181_3087: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Shewanella sp ANA-3

Gene: Shewana3_3112: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Shewanella sp MR-4

Gene: Shewmr4_2933: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Shewanella sp MR-7

Gene: Shewmr7_3015: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Shewanella baltica OS155

Gene: Sbal_1086: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Shewanella denitrificans OS217

Gene: Sden_2704: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B

Gene: Sama_0946: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Shewanella loihica PV-4

Gene: Shew_1117: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Shewanella pealeana ATCC 700345

Gene: Spea_1102: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_1150: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Shewanella piezotolerans WP3

Gene: swp_3701: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1213: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1313: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
nagX
 
Shewanella oneidensis MR-1

Gene: SO_3504: N-acetylglucosamine related transporter, NagX
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1079: N-acetylglucosamine related transporter, NagX
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3

Gene: Shewana3_3111: N-acetylglucosamine related transporter, NagX
 
Shewanella sp MR-4

Gene: Shewmr4_2932: N-acetylglucosamine related transporter, NagX
 
Shewanella sp MR-7

Gene: Shewmr7_3014: N-acetylglucosamine related transporter, NagX
 
Shewanella baltica OS155

Gene: Sbal_1087: N-acetylglucosamine related transporter, NagX
 
Shewanella denitrificans OS217

Gene: Sden_2703: N-acetylglucosamine related transporter, NagX
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B

Gene: Sama_0947: N-acetylglucosamine related transporter, NagX
 
Shewanella loihica PV-4

Gene: Shew_1118: N-acetylglucosamine related transporter, NagX
 
Shewanella pealeana ATCC 700345

Gene: Spea_1103: N-acetylglucosamine related transporter, NagX
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_1151: N-acetylglucosamine related transporter, NagX
 
Shewanella piezotolerans WP3

Gene: swp_3700: N-acetylglucosamine related transporter, NagX
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1214: N-acetylglucosamine related transporter, NagX
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1314: N-acetylglucosamine related transporter, NagX
N-acetylglucosamine related transporter, NagX
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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