Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LexA - Micrococcineae

Properties
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 62 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Arthrobacter aurescens TC1 10 5
Arthrobacter chlorophenolicus A6 10 5
Arthrobacter sp. FB24 10 5
Beutenbergia cavernae DSM 12333 7 4
Brachybacterium faecium DSM 4810 9 5
Brevibacterium linens BL2 7 4
Clavibacter michiganensis subsp. michiganensis NCPPB 382 4 4
Janibacter sp. HTCC2649 6 3
Jonesia denitrificans DSM 20603 8 4
Kocuria rhizophila DC2201 4 3
Kytococcus sedentarius DSM 20547
Leifsonia xyli subsp. xyli str. CTCB07 5 4
Renibacterium salmoninarum ATCC 33209 8 4
Tropheryma whipplei str. Twist
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
lexA
*
Arthrobacter aurescens TC1

Site:
position = -149
score = 5.02795
sequence = TAGAACAAATGTTTGA

Site:
position = -216
score = 5.48893
sequence = TAGAACACATATTCGA

Gene: AAur_1602: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Arthrobacter chlorophenolicus A6

Site:
position = -221
score = 5.69239
sequence = TAGAACACATGTTCGA

Site:
position = -153
score = 5.02795
sequence = TAGAACAAATGTTTGA

Gene: Achl_1470: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Arthrobacter sp. FB24

Site:
position = -40
score = 5.02795
sequence = TAGAACAAATGTTTGA

Site:
position = -107
score = 5.48893
sequence = TAGAACACATATTCGA

Gene: Arth_1468: SOS-response repressor and protease LexA (EC 3.4.21.88)
 
Beutenbergia cavernae DSM 12333

Gene: Bcav_2433: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Brachybacterium faecium DSM 4810

Site:
position = -167
score = 4.94237
sequence = CCGAACTCCTGTTCGA

Site:
position = -98
score = 5.05455
sequence = TCGAACACCTGTTTGG

Gene: Bfae_10620: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Brevibacterium linens BL2

Site:
position = -142
score = 4.99265
sequence = TCGAACATTTATGCGA

Site:
position = -193
score = 4.89169
sequence = TAGAACGTCTGTTCTA

Gene: BlinB01003436: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Site:
position = -229
score = 5.22354
sequence = CCGAACATACATTCGA

Site:
position = -156
score = 4.86254
sequence = TCGAACAGGTGTTTGC

Gene: CMM_2018: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Janibacter sp. HTCC2649

Site:
position = -103
score = 5.50187
sequence = TCGAACAGATGTTTGA

Site:
position = -172
score = 5.02537
sequence = TCGAAACGGTGTTCGA

Gene: JNB_00180: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Jonesia denitrificans DSM 20603

Site:
position = -251
score = 5.23499
sequence = TCGAACATACGTTCGT

Site:
position = -182
score = 5.43175
sequence = TCGAACAGGTGTTTGA

Gene: Jden_1054: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Kocuria rhizophila DC2201

Site:
position = -155
score = 5.40682
sequence = TCGAACACATATTTGA

Site:
position = -222
score = 5.40233
sequence = TAGAACACATCTTCGA

Gene: KRH_15760: SOS-response repressor and protease LexA (EC 3.4.21.88)
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_17230: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Leifsonia xyli subsp. xyli str. CTCB07

Site:
position = -198
score = 4.6975
sequence = CCGAATTTATCTTCGA

Site:
position = -123
score = 5.04106
sequence = TCGAACACATGTTTGT

Gene: Lxx15880: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Renibacterium salmoninarum ATCC 33209

Site:
position = -52
score = 5.10994
sequence = TAGAACATATATTTGA

Site:
position = -118
score = 5.35431
sequence = TAGAACATGTTTTCGA

Gene: RSal33209_0733: SOS-response repressor and protease LexA (EC 3.4.21.88)
 
Tropheryma whipplei str. Twist
SOS-response repressor and protease LexA (EC 3.4.21.88)
 
CRON 2.
recA
*
Arthrobacter aurescens TC1

Site:
position = -204
score = 5.37033
sequence = TCGAATATCTGTTCGG

Gene: AAur_1594: Recombinase A
*
Arthrobacter chlorophenolicus A6

Site:
position = -156
score = 5.30021
sequence = TCGAATACCTGTTCGG

Gene: Achl_1462: Recombinase A
*
Arthrobacter sp. FB24

Site:
position = -158
score = 5.37033
sequence = TCGAATATCTGTTCGG

Gene: Arth_1460: Recombinase A
*
Beutenbergia cavernae DSM 12333

Site:
position = -185
score = 5.09476
sequence = TCGAACACGCGTTCGC

Gene: Bcav_2448: Recombinase A
*
Brachybacterium faecium DSM 4810

Site:
position = -186
score = 5.24848
sequence = TCGAACGTCTGTTCGG

Gene: Bfae_10530: Recombinase A
 
Brevibacterium linens BL2

Gene: BlinB01003445: Recombinase A
*
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Site:
position = -213
score = 5.13217
sequence = TCGAATATCCCTTCGA

Gene: CMM_2025: Recombinase A
*
Janibacter sp. HTCC2649

Site:
position = -194
score = 5.42006
sequence = TCGAACACGTGTTCGT

Gene: JNB_05200: Recombinase A
*
Jonesia denitrificans DSM 20603

Site:
position = -208
score = 5.68218
sequence = TCGAACATGTGTTCGG

Gene: Jden_1041: Recombinase A
*
Kocuria rhizophila DC2201

Site:
position = -180
score = 5.31069
sequence = TCGAAGGTATATTCGA

Gene: KRH_15840: Recombinase A
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_17690: Recombinase A
*
Leifsonia xyli subsp. xyli str. CTCB07

Site:
position = -93
score = 5.46225
sequence = TCGAAGATATGTTCGG

Gene: Lxx16030: Recombinase A
*
Renibacterium salmoninarum ATCC 33209

Site:
position = -116
score = 5.37033
sequence = TCGAATATCTGTTCGG

Gene: RSal33209_0722: Recombinase A
 
Tropheryma whipplei str. Twist

Gene: TW611: Recombinase A
Recombinase A
recX
 
Arthrobacter aurescens TC1

Gene: AAur_1595: Regulatory protein RecX
 
Arthrobacter chlorophenolicus A6

Gene: Achl_1463: Regulatory protein RecX
 
Arthrobacter sp. FB24

Gene: Arth_1461: Regulatory protein RecX
 
Beutenbergia cavernae DSM 12333

Gene: Bcav_2447: Regulatory protein RecX
 
Brachybacterium faecium DSM 4810

Gene: Bfae_10540: Regulatory protein RecX
 
Brevibacterium linens BL2

Gene: BlinB01003444: Regulatory protein RecX
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Gene: CMM_2024: Regulatory protein RecX
 
Janibacter sp. HTCC2649

Gene: JNB_05195: Regulatory protein RecX
 
Jonesia denitrificans DSM 20603

Gene: Jden_1042: Regulatory protein RecX
 
Kocuria rhizophila DC2201

Gene: KRH_15830: Regulatory protein RecX
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_17680: Regulatory protein RecX
 
Leifsonia xyli subsp. xyli str. CTCB07

Gene: Lxx16000: Regulatory protein RecX
 
Renibacterium salmoninarum ATCC 33209

Gene: RSal33209_0723: Regulatory protein RecX
 
Tropheryma whipplei str. Twist
Regulatory protein RecX
 
CRON 3.
splB
*
Arthrobacter aurescens TC1

Site:
position = 11
score = 5.60075
sequence = TCGAACATACATTCGA

Gene: AAur_1619: DNA repair photolyase
*
Arthrobacter chlorophenolicus A6

Site:
position = -24
score = 5.72131
sequence = TCGAACATGTTTTCGA

Gene: Achl_1488: DNA repair photolyase
*
Arthrobacter sp. FB24

Site:
position = -25
score = 5.51415
sequence = TCGAACATACCTTCGA

Gene: Arth_1485: DNA repair photolyase
*
Beutenbergia cavernae DSM 12333

Site:
position = -24
score = 5.016
sequence = TCGGACGCGTGTTCGA

Gene: Bcav_2004: DNA repair photolyase
*
Brachybacterium faecium DSM 4810

Site:
position = -24
score = 5.66397
sequence = TCGAACACGCGTTCGA

Gene: Bfae_28900: DNA repair photolyase
*
Brevibacterium linens BL2

Site:
position = -24
score = 5.98927
sequence = TCGAACACGTGTTCGA

Gene: BlinB01001502: DNA repair photolyase
*
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Site:
position = -24
score = 4.96142
sequence = GCGAATGTGTGTTCGA

Gene: CMM_0905: DNA repair photolyase
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
*
Leifsonia xyli subsp. xyli str. CTCB07

Site:
position = -24
score = 5.76251
sequence = TAGAACATATGTTCGA

Gene: Lxx03480: DNA repair photolyase
 2
Renibacterium salmoninarum ATCC 33209

Gene: RSal33209_0753: DNA repair photolyase

Gene: RSal33209_0754: DNA repair photolyase
 
Tropheryma whipplei str. Twist
DNA repair photolyase
 
CRON 4.
uvrA
*
Arthrobacter aurescens TC1

Site:
position = -29
score = 5.14582
sequence = TCGAAGAAGTTTTCGA

Gene: AAur_2080: Excinuclease ABC, subunit A
*
Arthrobacter chlorophenolicus A6

Site:
position = -29
score = 5.21594
sequence = TCGAAGAAATTTTCGA

Gene: Achl_1820: Excinuclease ABC, subunit A
*
Arthrobacter sp. FB24

Site:
position = -29
score = 5.14582
sequence = TCGAAGAAGTTTTCGA

Gene: Arth_2079: Excinuclease ABC, subunit A
*
Beutenbergia cavernae DSM 12333

Site:
position = -8
score = 5.2329
sequence = TCGAACAGGTGTGCGA

Gene: Bcav_2178: Excinuclease ABC, subunit A
*
Brachybacterium faecium DSM 4810

Site:
position = -44
score = 5.39526
sequence = CCGAACAGCTGTTCGA

Gene: Bfae_15150: Excinuclease ABC, subunit A
 
Brevibacterium linens BL2

Gene: BlinB01000097: Excinuclease ABC, subunit A
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Gene: CMM_1749: Excinuclease ABC, subunit A
 
Janibacter sp. HTCC2649

Gene: JNB_03565: Excinuclease ABC, subunit A
*
Jonesia denitrificans DSM 20603

Site:
position = -45
score = 5.30302
sequence = TCGAACATCTGTGCGA

Gene: Jden_1251: Excinuclease ABC, subunit A
 
Kocuria rhizophila DC2201

Gene: KRH_12030: Excinuclease ABC, subunit A
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_13060: Excinuclease ABC, subunit A
*
Leifsonia xyli subsp. xyli str. CTCB07

Site:
position = -21
score = 4.99272
sequence = TCGAACAAAACTTCGA

Gene: Lxx11470: Excinuclease ABC, subunit A
*
Renibacterium salmoninarum ATCC 33209

Site:
position = -30
score = 5.43126
sequence = TCGAAGACATTTTCGA

Gene: RSal33209_2279: Excinuclease ABC, subunit A
 
Tropheryma whipplei str. Twist

Gene: TW296: Excinuclease ABC, subunit A
Excinuclease ABC, subunit A
PF00702
 
Arthrobacter aurescens TC1

Gene: AAur_2081: Putative phosphatase, HAD family
 
Arthrobacter chlorophenolicus A6

Gene: Achl_1821: Putative phosphatase, HAD family
 
Arthrobacter sp. FB24

Gene: Arth_2080: Putative phosphatase, HAD family
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201

Gene: KRH_12040: Putative phosphatase, HAD family
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209

Gene: RSal33209_2278: Putative phosphatase, HAD family
 
Tropheryma whipplei str. Twist
Putative phosphatase, HAD family
PF01553
 
Arthrobacter aurescens TC1

Gene: AAur_2082: Putative acyltransferase
 
Arthrobacter chlorophenolicus A6

Gene: Achl_1822: Putative acyltransferase
 
Arthrobacter sp. FB24

Gene: Arth_2081: Putative acyltransferase
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201

Gene: KRH_12050: Putative acyltransferase
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209

Gene: RSal33209_2277: Putative acyltransferase
 
Tropheryma whipplei str. Twist
Putative acyltransferase
uvrC
 
Arthrobacter aurescens TC1

Gene: AAur_2083: Excinuclease ABC, subunit C
 
Arthrobacter chlorophenolicus A6

Gene: Achl_1823: Excinuclease ABC, subunit C
 
Arthrobacter sp. FB24

Gene: Arth_2082: Excinuclease ABC, subunit C
 
Beutenbergia cavernae DSM 12333

Gene: Bcav_2175: Excinuclease ABC, subunit C
 
Brachybacterium faecium DSM 4810

Gene: Bfae_15160: Excinuclease ABC, subunit C
 
Brevibacterium linens BL2

Gene: BlinB01000096: Excinuclease ABC, subunit C
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Gene: CMM_1748: Excinuclease ABC, subunit C
 
Janibacter sp. HTCC2649

Gene: JNB_03530: Excinuclease ABC, subunit C
 
Jonesia denitrificans DSM 20603

Gene: Jden_1252: Excinuclease ABC, subunit C
 
Kocuria rhizophila DC2201

Gene: KRH_12060: Excinuclease ABC, subunit C
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_13070: Excinuclease ABC, subunit C
 
Leifsonia xyli subsp. xyli str. CTCB07

Gene: Lxx11480: Excinuclease ABC, subunit C
 
Renibacterium salmoninarum ATCC 33209

Gene: RSal33209_2276: Excinuclease ABC, subunit C
 
Tropheryma whipplei str. Twist

Gene: TW297: Excinuclease ABC, subunit C
Excinuclease ABC, subunit C
 
CRON 5.
imuA
 
Arthrobacter aurescens TC1
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24
*
Beutenbergia cavernae DSM 12333

Site:
position = -53
score = 5.66555
sequence = TCGAACAACTGTTCGA

Gene: Bcav_2289: Predicted RecA/RadA recombinase
*
Brachybacterium faecium DSM 4810

Site:
position = -60
score = 5.36345
sequence = TCGAACCCCTGTTCGA

Site:
position = -123
score = 4.88266
sequence = TCGCATGCATGTTCGA

Gene: Bfae_15760: Predicted RecA/RadA recombinase
*
Brevibacterium linens BL2

Site:
position = -18
score = 4.84566
sequence = TAGAACACTAGTTCGA

Gene: BlinB01000045: Predicted RecA/RadA recombinase
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
*
Jonesia denitrificans DSM 20603

Site:
position = -76
score = 5.73409
sequence = TCGAACACACGTTCGA

Gene: Jden_1185: Predicted RecA/RadA recombinase
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Predicted RecA/RadA recombinase
imuB
 
Arthrobacter aurescens TC1
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24
 
Beutenbergia cavernae DSM 12333

Gene: Bcav_2288: DNA polymerase-like protein PA0670
 
Brachybacterium faecium DSM 4810

Gene: Bfae_15750: DNA polymerase-like protein PA0670
 
Brevibacterium linens BL2

Gene: BlinB01000044: DNA polymerase-like protein PA0670
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603

Gene: Jden_1186: DNA polymerase-like protein PA0670
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
DNA polymerase-like protein PA0670
dnaE2
 
Arthrobacter aurescens TC1
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24
 
Beutenbergia cavernae DSM 12333

Gene: Bcav_2287: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Brachybacterium faecium DSM 4810

Gene: Bfae_15740: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Brevibacterium linens BL2

Gene: BlinB01000043: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603

Gene: Jden_1187: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
DNA polymerase III alpha subunit (EC 2.7.7.7)
 
CRON 6.
Achl_2045
*
Arthrobacter aurescens TC1

Site:
position = -40
score = 5.46613
sequence = TCGAACATACTTTCGA

Gene: AAur_2311: Conserved hypothetical protein
*
Arthrobacter chlorophenolicus A6

Site:
position = -59
score = 5.85593
sequence = TCGAACACATATTCGA

Gene: Achl_2045: Conserved hypothetical protein
*
Arthrobacter sp. FB24

Site:
position = -108
score = 5.636
sequence = TCGAAGATATATTCGA

Gene: Arth_2319: Conserved hypothetical protein
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
*
Brevibacterium linens BL2

Site:
position = -33
score = 5.84407
sequence = TCGAACATTTGTTCGA

Gene: BlinB01003614: Conserved hypothetical protein
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
*
Janibacter sp. HTCC2649

Site:
position = -80
score = 5.95099
sequence = TCGAACAGATGTTCGA

Gene: JNB_01670: Conserved hypothetical protein
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_16060: Conserved hypothetical protein
 
Leifsonia xyli subsp. xyli str. CTCB07
*
Renibacterium salmoninarum ATCC 33209

Site:
position = -101
score = 5.7226
sequence = TCGAATATATATTCGA

Gene: RSal33209_3492: Conserved hypothetical protein
 
Tropheryma whipplei str. Twist
Conserved hypothetical protein
JNB_01675
 
Arthrobacter aurescens TC1
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649

Gene: JNB_01675: Conserved hypothetical protein
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_16050: Conserved hypothetical protein
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Conserved hypothetical protein
dnaE
 
Arthrobacter aurescens TC1

Gene: AAur_2310: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Arthrobacter chlorophenolicus A6

Gene: Achl_2044: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Arthrobacter sp. FB24

Gene: Arth_2318: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2

Gene: BlinB01003613: DNA polymerase III alpha subunit (EC 2.7.7.7)
*
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Site:
position = -62
score = 5.62568
sequence = TCGAACATCCGTTCGA

Gene: CMM_1518: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Janibacter sp. HTCC2649

Gene: JNB_01680: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Jonesia denitrificans DSM 20603
*
Kocuria rhizophila DC2201

Site:
position = -24
score = 5.20389
sequence = TCGAACACAGTTTCGA

Gene: KRH_11560: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_16040: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
DNA polymerase III alpha subunit (EC 2.7.7.7)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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