Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Bpro_5165 - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 1 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666 2 1
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG1573
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_1872: Uracil-DNA glycosylase superfamily protein
 
Acidovorax sp. JS42

Gene: Ajs_3380: Uracil-DNA glycosylase superfamily protein
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
*
Polaromonas sp. JS666

Site:
position = -172
score = 6.73847
sequence = TTGTGGTGCA-(14)-CTTTGATGCT

Gene: Bpro_5163: Uracil-DNA glycosylase superfamily protein
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_4129: Uracil-DNA glycosylase superfamily protein
 
Variovorax paradoxus S110

Gene: Vapar_0123: Uracil-DNA glycosylase superfamily protein
 
Verminephrobacter eiseniae EF01-2
Uracil-DNA glycosylase superfamily protein
cog3189
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42

Gene: Ajs_3379: Uncharacterized conserved protein
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_1203: Uncharacterized conserved protein
 
Delftia acidovorans SPH-1

Gene: Daci_3691: Uncharacterized conserved protein
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 2
Polaromonas sp. JS666

Gene: Bpro_2981: Uncharacterized conserved protein

Gene: Bpro_5164: Uncharacterized conserved protein
 2
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_4116: Uncharacterized conserved protein

Gene: Rfer_4130: Uncharacterized conserved protein
 
Variovorax paradoxus S110

Gene: Vapar_2232: Uncharacterized conserved protein
 
Verminephrobacter eiseniae EF01-2
Uncharacterized conserved protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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