Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog H16_B0275 - Ralstonia

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 3 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Cupriavidus taiwanensis
Ralstonia eutropha H16 2 1
Ralstonia eutropha JMP134 4 2
Ralstonia metallidurans CH34
Ralstonia pickettii 12J
Ralstonia solanacearum GMI1000
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF01966
 
Cupriavidus taiwanensis
 
Ralstonia eutropha H16
*
Ralstonia eutropha JMP134

Site:
position = -176
score = 6.94182
sequence = CAATAGTACA-(14)-TCTTGGGTCT

Gene: Reut_C6136: Metal-dependent phosphohydrolase, HD subdomain
 
Ralstonia metallidurans CH34
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
Metal-dependent phosphohydrolase, HD subdomain
COG1028
 
Cupriavidus taiwanensis
 
Ralstonia eutropha H16
 
Ralstonia eutropha JMP134

Gene: Reut_C6137: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
 
Ralstonia metallidurans CH34
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
 
CRON 2.
COG1917
 
Cupriavidus taiwanensis
*2
Ralstonia eutropha H16

Site:
position = -84
score = 8.33893
sequence = CTCTGGTACA-(14)-TTTTGGTTCT

Gene: H16_B0276: Uncharacterized conserved protein, contains double-stranded beta-helix domain

Gene: H16_A1751: Uncharacterized conserved protein, contains double-stranded beta-helix domain
*
Ralstonia eutropha JMP134

Site:
position = -89
score = 10.3266
sequence = TCTTGGTACA-(14)-TCCTGGTGCT

Gene: Reut_C6134: Uncharacterized conserved protein, contains double-stranded beta-helix domain
 
Ralstonia metallidurans CH34
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
Uncharacterized conserved protein, contains double-stranded beta-helix domain
COG2128
 
Cupriavidus taiwanensis
 2
Ralstonia eutropha H16

Gene: H16_B0277: Uncharacterized conserved protein

Gene: H16_A1750: Uncharacterized conserved protein
 
Ralstonia eutropha JMP134

Gene: Reut_C6133: Uncharacterized conserved protein
 
Ralstonia metallidurans CH34
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
Uncharacterized conserved protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD