Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Bamb_6386 - Burkholderia

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Burkholderia cepacia AMMD 3 2
Burkholderia glumae BGR1 2 1
Burkholderia mallei ATCC 23344
Burkholderia phymatum STM815 8 4
Burkholderia pseudomallei K96243
Burkholderia sp. 383
Burkholderia vietnamiensis G4
Burkholderia xenovorans LB400
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF01966
*
Burkholderia cepacia AMMD

Site:
position = -143
score = 6.41876
sequence = CGATGGTGCA-(14)-TCTTGGGACT

Gene: Bamb_6387: Metal-dependent phosphohydrolase, HD subdomain
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
*2
Burkholderia phymatum STM815

Site:
position = -114
score = 5.7837
sequence = CCCAGGTGCA-(14)-TTCCGGCGCG

Site:
position = -176
score = 6.69445
sequence = CGATAGTACA-(14)-TCTTGGGCCT

Gene: Bphy_6986: Metal-dependent phosphohydrolase, HD subdomain

Site:
position = -175
score = 6.94182
sequence = CGATAGTACA-(14)-TCTTGGGTCT

Gene: Bphy_3551: Metal-dependent phosphohydrolase, HD subdomain
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383

Gene: Bcep18194_A4971: Metal-dependent phosphohydrolase, HD subdomain
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
Metal-dependent phosphohydrolase, HD subdomain
COG1028
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
 2
Burkholderia phymatum STM815

Gene: Bphy_6985: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene: Bphy_3550: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
 
CRON 2.
COG1917
*
Burkholderia cepacia AMMD

Site:
position = -89
score = 10.3266
sequence = TCTTGGTACA-(14)-TCCTGGTGCT

Gene: Bamb_6385: Uncharacterized conserved protein, contains double-stranded beta-helix domain
*
Burkholderia glumae BGR1

Site:
position = -91
score = 8.21482
sequence = CCATGGTACA-(14)-TTTCAGTGCT

Gene: bglu_2g19030: Uncharacterized conserved protein, contains double-stranded beta-helix domain
 
Burkholderia mallei ATCC 23344
*2
Burkholderia phymatum STM815

Site:
position = -90
score = 10.3266
sequence = TCTTGGTACA-(14)-TCCTGGTGCT

Gene: Bphy_6988: Uncharacterized conserved protein, contains double-stranded beta-helix domain

Site:
position = -89
score = 10.3266
sequence = TCTTGGTACA-(14)-TCCTGGTGCT

Gene: Bphy_3553: Uncharacterized conserved protein, contains double-stranded beta-helix domain
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
Uncharacterized conserved protein, contains double-stranded beta-helix domain
COG2128
 
Burkholderia cepacia AMMD

Gene: Bamb_6384: Uncharacterized conserved protein
 
Burkholderia glumae BGR1

Gene: bglu_2g19040: Uncharacterized conserved protein
 
Burkholderia mallei ATCC 23344
 2
Burkholderia phymatum STM815

Gene: Bphy_3554: Uncharacterized conserved protein

Gene: Bphy_6989: Uncharacterized conserved protein
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
Uncharacterized conserved protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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