Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxQ3 - Rhizobiales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector:
Phylum: Proteobacteria/Alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 3 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Agrobacterium tumefaciens str. C58 (Cereon)
Azorhizobium caulinodans ORS 571 1 1
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110 1 1
Bradyrhizobium sp. BTAi1 2 1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42
Rhizobium leguminosarum bv. viciae 3841
Rhizobium sp. NGR234
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021
Xanthobacter autotrophicus Py2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG5457
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu1847: Uncharacterized conserved small protein
*
Azorhizobium caulinodans ORS 571

Site:
position = -98
score = 10.7321
sequence = ATTGCTCC-(1)-AGTGCAAT-(6)-ATTGCGCT

Gene: AZC_4466: Uncharacterized conserved small protein
 
Bartonella quintana str. Toulouse
*
Bradyrhizobium japonicum USDA 110

Site:
position = -107
score = 10.7919
sequence = ATTGCACC-(1)-AGAGCAAT-(6)-CTTGCTCC

Gene: bll5859: Uncharacterized conserved small protein
*
Bradyrhizobium sp. BTAi1

Site:
position = -150
score = 11.5307
sequence = ATTGCACC-(1)-AGAGCAAT-(6)-ATTGCACC

Gene: BBta_6781: Uncharacterized conserved small protein
 
Brucella melitensis 16M
 2
Mesorhizobium loti MAFF303099

Gene: msr0060: Uncharacterized conserved small protein

Gene: msr3036: Uncharacterized conserved small protein
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42

Gene: RHE_CH02283: Uncharacterized conserved small protein
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMc00491: Uncharacterized conserved small protein
 
Xanthobacter autotrophicus Py2
Uncharacterized conserved small protein
PF02567
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu4269: Phenazine biosynthesis PhzC/PhzF protein
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1

Gene: BBta_6782: Phenazine biosynthesis PhzC/PhzF protein
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Phenazine biosynthesis PhzC/PhzF protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD