Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxQ3 - Burkholderia

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Metabolite transport; Pyridoxine/pyridoxal homeostasis
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 3 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Burkholderia cepacia AMMD
Burkholderia glumae BGR1
Burkholderia mallei ATCC 23344
Burkholderia phymatum STM815 1 1
Burkholderia pseudomallei K96243 1 1
Burkholderia sp. 383 1 1
Burkholderia vietnamiensis G4
Burkholderia xenovorans LB400
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG0730
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815
 
Burkholderia pseudomallei K96243
*
Burkholderia sp. 383

Site:
position = -266
score = 8.60182
sequence = ATTGCACC-(1)-AGGTCAAT-(6)-ATTGCACT

Gene: Bcep18194_C7709: Predicted permeases
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
Predicted permeases
 
CRON 2.
PF01965
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
*
Burkholderia phymatum STM815

Site:
position = -82
score = 12.4317
sequence = GATGTATT-(1)-ATGACAAT-(6)-ATTGTAAT

Gene: Bphy_5570: ThiJ/PfpI domain-containing protein
*
Burkholderia pseudomallei K96243

Site:
position = -85
score = 13.5869
sequence = GATGTATC-(1)-ATGACAAT-(6)-ATTGTATT

Gene: BPSS0450: ThiJ/PfpI domain-containing protein
 
Burkholderia sp. 383

Gene: Bcep18194_C7256: ThiJ/PfpI domain-containing protein
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
ThiJ/PfpI domain-containing protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD