Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LexA - Planctomycetes

Properties
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Planctomycetes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 9 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Blastopirellula marina DSM 3645 3 3
Gemmata obscuriglobus UQM 2246 1 1
Pirellula sp. 1 2 2
Pirellula staleyi DSM 6068 1 1
Planctomyces maris DSM 8797 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
recO
*
Blastopirellula marina DSM 3645

Site:
position = -157
score = 4.47375
sequence = TTCGACGTGATGTCGGG

Gene: DSM3645_07700: DNA recombination and repair protein RecO
 
Gemmata obscuriglobus UQM 2246

Gene: GobsU_010100031169: DNA recombination and repair protein RecO
 
Pirellula sp. 1
 
Pirellula staleyi DSM 6068

Gene: Psta_1748: DNA recombination and repair protein RecO
 
Planctomyces maris DSM 8797

Gene: PM8797T_14219: DNA recombination and repair protein RecO
DNA recombination and repair protein RecO
 
CRON 2.
recA
*
Blastopirellula marina DSM 3645

Site:
position = -196
score = 4.38545
sequence = CGCGAAAAAATTTTGGG

Gene: DSM3645_17620: Recombinase A
 
Gemmata obscuriglobus UQM 2246

Gene: GobsU_010100027671: Recombinase A
*
Pirellula sp. 1

Site:
position = -178
score = 4.37292
sequence = GCCGAACTCACTTCGGT

Gene: RB11863: Recombinase A
 
Pirellula staleyi DSM 6068

Gene: Psta_3796: Recombinase A
*
Planctomyces maris DSM 8797

Site:
position = -47
score = 5.37679
sequence = CTCGAACTCATTGCGGG

Gene: PM8797T_17684: Recombinase A
Recombinase A
 
CRON 3.
dnaX
 
Blastopirellula marina DSM 3645

Gene: DSM3645_28667: DNA polymerase III subunits gamma and tau (EC 2.7.7.7)
 
Gemmata obscuriglobus UQM 2246

Gene: GobsU_010100014157: DNA polymerase III subunits gamma and tau (EC 2.7.7.7)
*
Pirellula sp. 1

Site:
position = -149
score = 5.36327
sequence = CTCAAACTGAGTTCGGG

Gene: RB6494: DNA polymerase III subunits gamma and tau (EC 2.7.7.7)
*
Pirellula staleyi DSM 6068

Site:
position = -6
score = 4.31
sequence = CTCGTCATGAGTGCGTG

Gene: Psta_2525: DNA polymerase III subunits gamma and tau (EC 2.7.7.7)
 
Planctomyces maris DSM 8797

Gene: PM8797T_30526: DNA polymerase III subunits gamma and tau (EC 2.7.7.7)
DNA polymerase III subunits gamma and tau (EC 2.7.7.7)
 
CRON 4.
hsdR
*
Blastopirellula marina DSM 3645

Site:
position = -62
score = 5.109
sequence = CCCAAACTCCTTTCGGG

Gene: DSM3645_05635: Type I restriction-modification system, restriction subunit R (EC 3.1.21.3)
 
Gemmata obscuriglobus UQM 2246
 
Pirellula sp. 1
 
Pirellula staleyi DSM 6068
 
Planctomyces maris DSM 8797
Type I restriction-modification system, restriction subunit R (EC 3.1.21.3)
 
CRON 5.
lexA
 
Blastopirellula marina DSM 3645

Gene: DSM3645_18051: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Gemmata obscuriglobus UQM 2246

Site:
position = -134
score = 3.99963
sequence = CGCGAAATGCTATCGCG

Gene: GobsU_010100039258: SOS-response repressor and protease LexA (EC 3.4.21.88)
 
Pirellula sp. 1

Gene: RB7437: SOS-response repressor and protease LexA (EC 3.4.21.88)
 
Pirellula staleyi DSM 6068

Gene: Psta_0492: SOS-response repressor and protease LexA (EC 3.4.21.88)
*2
Planctomyces maris DSM 8797

Site:
position = -101
score = 3.73622
sequence = CCCAAAATGTTTTTTTG

Gene: PM8797T_01334: SOS-response repressor and protease LexA (EC 3.4.21.88)

Gene: PM8797T_16700: SOS-response repressor and protease LexA (EC 3.4.21.88)
SOS-response repressor and protease LexA (EC 3.4.21.88)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD