Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog MalR - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Maltodextrin utilization
Effector: Maltose
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 67 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 4 3
Shewanella putrefaciens CN-32
Shewanella sp W3-18-1
Shewanella sp ANA-3 8 4
Shewanella sp MR-4 8 4
Shewanella sp MR-7 8 4
Shewanella baltica OS155 7 4
Shewanella denitrificans OS217 10 5
Shewanella frigidimarina NCIMB 400 9 4
Shewanella amazonensis SB2B 10 5
Shewanella loihica PV-4 8 4
Shewanella pealeana ATCC 700345
Shewanella halifaxensis HAW-EB4
Shewanella piezotolerans WP3 10 5
Shewanella sediminis HAW-EB3
Shewanella woodyi ATCC 51908 9 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
malZ
 
Shewanella oneidensis MR-1

Gene: SO_2213: Maltodextrin glucosidase (EC 3.2.1.20)
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
*
Shewanella sp ANA-3

Site:
position = -163
score = 6.20625
sequence = TTTGCATACGTATGCAGG

Site:
position = -312
score = 6.06654
sequence = TGTGCATACGTATTCAAT

Gene: Shewana3_2311: Maltodextrin glucosidase (EC 3.2.1.20)
*
Shewanella sp MR-4

Site:
position = -312
score = 6.06654
sequence = TGTGCATACGTATTCAAT

Site:
position = -163
score = 6.20625
sequence = TTTGCATACGTATGCAGG

Gene: Shewmr4_2133: Maltodextrin glucosidase (EC 3.2.1.20)
*
Shewanella sp MR-7

Site:
position = -312
score = 6.06654
sequence = TGTGCATACGTATTCAAT

Site:
position = -163
score = 6.20625
sequence = TTTGCATACGTATGCAGG

Gene: Shewmr7_2209: Maltodextrin glucosidase (EC 3.2.1.20)
*
Shewanella baltica OS155

Site:
position = -312
score = 5.99022
sequence = AGTGCATACGTATTCAAT

Site:
position = -163
score = 6.17355
sequence = TCTGCATACGTATGCAGG

Gene: Sbal_2287: Maltodextrin glucosidase (EC 3.2.1.20)
*
Shewanella denitrificans OS217

Site:
position = -143
score = 6.22531
sequence = TTTGCATACGTATGCAGT

Site:
position = -292
score = 6.05528
sequence = TATGCATACGTATTCAAT

Gene: Sden_2028: Maltodextrin glucosidase (EC 3.2.1.20)
*
Shewanella frigidimarina NCIMB 400

Site:
position = -147
score = 6.20625
sequence = TTTGCATACGTATGCAGG

Site:
position = -296
score = 6.02573
sequence = TATGCATACGTATTCAAC

Gene: Sfri_1788: Maltodextrin glucosidase (EC 3.2.1.20)
*
Shewanella amazonensis SB2B

Site:
position = -167
score = 6.10124
sequence = TGTGCATACGTATGCAGC

Site:
position = -317
score = 6.06654
sequence = AGTGCATACGTATTCAAA

Gene: Sama_1662: Maltodextrin glucosidase (EC 3.2.1.20)
*
Shewanella loihica PV-4

Site:
position = -311
score = 6.1316
sequence = TATGCATACGTATTCAAA

Site:
position = -160
score = 6.22531
sequence = TTTGCATACGTATGCAGT

Gene: Shew_1889: Maltodextrin glucosidase (EC 3.2.1.20)
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
*
Shewanella piezotolerans WP3

Site:
position = -154
score = 5.8854
sequence = ATTACATACGTATGCAGA

Site:
position = -303
score = 6.05528
sequence = TATGCATACGTATTCAAT

Gene: swp_2670: Maltodextrin glucosidase (EC 3.2.1.20)
 
Shewanella sediminis HAW-EB3
*
Shewanella woodyi ATCC 51908

Site:
position = -198
score = 6.1316
sequence = TATGCATACGTATTCAAA

Site:
position = -47
score = 6.19586
sequence = TATGCATACGTATGCAGA

Gene: Swoo_2210: Maltodextrin glucosidase (EC 3.2.1.20)
Maltodextrin glucosidase (EC 3.2.1.20)
glcP
 
Shewanella oneidensis MR-1

Gene: SO_2213.1: Predicted glucose transporter in maltodextrin utilization gene cluster
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3

Gene: Shewana3_2310: Predicted glucose transporter in maltodextrin utilization gene cluster
 
Shewanella sp MR-4

Gene: Shewmr4_2132: Predicted glucose transporter in maltodextrin utilization gene cluster
 
Shewanella sp MR-7

Gene: Shewmr7_2208: Predicted glucose transporter in maltodextrin utilization gene cluster
 
Shewanella baltica OS155

Gene: Sbal_2286: Predicted glucose transporter in maltodextrin utilization gene cluster
 
Shewanella denitrificans OS217

Gene: Sden_2027: Predicted glucose transporter in maltodextrin utilization gene cluster
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1789: Predicted glucose transporter in maltodextrin utilization gene cluster
 
Shewanella amazonensis SB2B

Gene: Sama_1663: Predicted glucose transporter in maltodextrin utilization gene cluster
 
Shewanella loihica PV-4

Gene: Shew_1890: Predicted glucose transporter in maltodextrin utilization gene cluster
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3

Gene: swp_2669: Predicted glucose transporter in maltodextrin utilization gene cluster
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908

Gene: Swoo_2211: Predicted glucose transporter in maltodextrin utilization gene cluster
Predicted glucose transporter in maltodextrin utilization gene cluster
 
CRON 2.
susB
*
Shewanella oneidensis MR-1

Site:
position = -90
score = 5.41109
sequence = GTGGAATACGTATGCAAG

Gene: SO_2450: Alpha-glucosidase (EC 3.2.1.20)
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
*
Shewanella sp ANA-3

Site:
position = -90
score = 6.03698
sequence = GGTGAATACGTATGCAAA

Gene: Shewana3_1931: Alpha-glucosidase (EC 3.2.1.20)
*
Shewanella sp MR-4

Site:
position = -90
score = 6.03698
sequence = GGTGAATACGTATGCAAA

Gene: Shewmr4_1876: Alpha-glucosidase (EC 3.2.1.20)
*
Shewanella sp MR-7

Site:
position = -90
score = 6.03698
sequence = GGTGAATACGTATGCAAA

Gene: Shewmr7_2102: Alpha-glucosidase (EC 3.2.1.20)
*
Shewanella baltica OS155

Site:
position = -90
score = 5.90891
sequence = GGTGAATACGTATGCAGG

Gene: Sbal_2329: Alpha-glucosidase (EC 3.2.1.20)
*
Shewanella denitrificans OS217

Site:
position = -100
score = 5.66038
sequence = CCTGAATACGTATGTAGT

Gene: Sden_2002: Alpha-glucosidase (EC 3.2.1.20)
*
Shewanella frigidimarina NCIMB 400

Site:
position = -92
score = 6.12836
sequence = ACTGAATACGTATGCAAA

Gene: Sfri_1777: Alpha-glucosidase (EC 3.2.1.20)
*
Shewanella amazonensis SB2B

Site:
position = -89
score = 5.96024
sequence = GCTGAATACGTATGCAGC

Gene: Sama_1108: Alpha-glucosidase (EC 3.2.1.20)
*
Shewanella loihica PV-4

Site:
position = -164
score = 5.89842
sequence = GGTGAATACGTATGCAGC

Gene: Shew_1876: Alpha-glucosidase (EC 3.2.1.20)
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
*
Shewanella piezotolerans WP3

Site:
position = -111
score = 6.14198
sequence = TTTGAATACGTATGCAAG

Gene: swp_2676: Alpha-glucosidase (EC 3.2.1.20)
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Alpha-glucosidase (EC 3.2.1.20)
 
CRON 3.
malT
*
Shewanella oneidensis MR-1

Site:
position = -393
score = 5.59044
sequence = gaTGaATACGTATGtAAg

Gene: SO_2458: Predicted maltose transporter MalT
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
*
Shewanella sp ANA-3

Site:
position = -377
score = 5.59044
sequence = GATGAATACGTATGTAAG

Gene: Shewana3_1925: Predicted maltose transporter MalT
*
Shewanella sp MR-4

Site:
position = -378
score = 5.59044
sequence = GATGAATACGTATGTAAG

Gene: Shewmr4_1870: Predicted maltose transporter MalT
*
Shewanella sp MR-7

Site:
position = -378
score = 5.59044
sequence = GATGAATACGTATGTAAG

Gene: Shewmr7_2108: Predicted maltose transporter MalT
*
Shewanella baltica OS155

Site:
position = -518
score = 5.59044
sequence = gaTGaATACGTATGtAAg

Gene: Sbal_2347: Predicted maltose transporter MalT
*
Shewanella denitrificans OS217

Site:
position = -294
score = 5.57681
sequence = GATGAATACGTATGTAGT

Gene: Sden_2003: Predicted maltose transporter MalT
*
Shewanella frigidimarina NCIMB 400

Site:
position = -353
score = 5.5873
sequence = CATGAATACGTATGTAGT

Gene: Sfri_1776: Predicted maltose transporter MalT
*
Shewanella amazonensis SB2B

Site:
position = -268
score = 5.59044
sequence = GATGAATACGTATGTAAG

Gene: Sama_1657: Predicted maltose transporter MalT
*
Shewanella loihica PV-4

Site:
position = -316
score = 5.6095
sequence = GATGAATACGTATGTAAT

Gene: Shew_1874: Predicted maltose transporter MalT
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
*
Shewanella piezotolerans WP3

Site:
position = -469
score = 5.51423
sequence = caTGaATACGTATGtAtt

Gene: swp_2681: Predicted maltose transporter MalT
 
Shewanella sediminis HAW-EB3
*
Shewanella woodyi ATCC 51908

Site:
position = -282
score = 5.94084
sequence = CATGAATACGTATGCAAG

Gene: Swoo_2202: Predicted maltose transporter MalT
Predicted maltose transporter MalT
cga
 
Shewanella oneidensis MR-1

Gene: SO_2459: Glucoamylase (EC 3.2.1.3)
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3

Gene: Shewana3_1924: Glucoamylase (EC 3.2.1.3)
 
Shewanella sp MR-4

Gene: Shewmr4_1869: Glucoamylase (EC 3.2.1.3)
 
Shewanella sp MR-7

Gene: Shewmr7_2109: Glucoamylase (EC 3.2.1.3)
 2
Shewanella baltica OS155

Gene: Sbal_2349: Glucoamylase (EC 3.2.1.3)

Gene: Sbal_2348: Glucoamylase (EC 3.2.1.3)
 
Shewanella denitrificans OS217

Gene: Sden_2004: Glucoamylase (EC 3.2.1.3)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1775: Glucoamylase (EC 3.2.1.3)
 
Shewanella amazonensis SB2B

Gene: Sama_1656: Glucoamylase (EC 3.2.1.3)
 
Shewanella loihica PV-4

Gene: Shew_1873: Glucoamylase (EC 3.2.1.3)
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3

Gene: swp_2682: Glucoamylase (EC 3.2.1.3)
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908

Gene: Swoo_2201: Glucoamylase (EC 3.2.1.3)
Glucoamylase (EC 3.2.1.3)
 
CRON 4.
omp(Mal)
*
Shewanella oneidensis MR-1

Site:
position = -202
score = 6.06654
sequence = ATTGAATACGTATGCACA

Site:
position = -351
score = 6.20625
sequence = CCTGCATACGTATGCAAA

Gene: SO_2162: Predicted maltose-specific TonB-dependent receptor
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
*
Shewanella sp ANA-3

Site:
position = -204
score = 6.06654
sequence = ATTGAATACGTATGCACA

Site:
position = -353
score = 6.20625
sequence = CCTGCATACGTATGCAAA

Gene: Shewana3_2312: Predicted maltose-specific TonB-dependent receptor
*
Shewanella sp MR-4

Site:
position = -204
score = 6.06654
sequence = ATTGAATACGTATGCACA

Site:
position = -353
score = 6.20625
sequence = CCTGCATACGTATGCAAA

Gene: Shewmr4_2134: Predicted maltose-specific TonB-dependent receptor
*
Shewanella sp MR-7

Site:
position = -353
score = 6.20625
sequence = CCTGCATACGTATGCAAA

Site:
position = -204
score = 6.06654
sequence = ATTGAATACGTATGCACA

Gene: Shewmr7_2210: Predicted maltose-specific TonB-dependent receptor
*
Shewanella baltica OS155

Site:
position = -201
score = 5.99022
sequence = ATTGAATACGTATGCACT

Site:
position = -350
score = 6.17355
sequence = CCTGCATACGTATGCAGA

Gene: Sbal_2288: Predicted maltose-specific TonB-dependent receptor
*
Shewanella denitrificans OS217

Site:
position = -205
score = 6.05528
sequence = ATTGAATACGTATGCATA

Site:
position = -354
score = 6.22531
sequence = ACTGCATACGTATGCAAA

Gene: Sden_2029: Predicted maltose-specific TonB-dependent receptor
*
Shewanella frigidimarina NCIMB 400

Site:
position = -375
score = 6.20625
sequence = CCTGCATACGTATGCAAA

Site:
position = -226
score = 6.02573
sequence = GTTGAATACGTATGCATA

Gene: Sfri_1787: Predicted maltose-specific TonB-dependent receptor
*
Shewanella amazonensis SB2B

Site:
position = -206
score = 6.06654
sequence = TTTGAATACGTATGCACT

Site:
position = -356
score = 6.10124
sequence = GCTGCATACGTATGCACA

Gene: Sama_1661: Predicted maltose-specific TonB-dependent receptor
*
Shewanella loihica PV-4

Site:
position = -192
score = 6.1316
sequence = TTTGAATACGTATGCATA

Site:
position = -343
score = 6.22531
sequence = ACTGCATACGTATGCAAA

Gene: Shew_1888: Predicted maltose-specific TonB-dependent receptor
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
*
Shewanella piezotolerans WP3

Site:
position = -187
score = 6.05528
sequence = ATTGAATACGTATGCATA

Site:
position = -336
score = 5.8854
sequence = TCTGCATACGTATGTAAT

Gene: swp_2671: Predicted maltose-specific TonB-dependent receptor
 
Shewanella sediminis HAW-EB3
*
Shewanella woodyi ATCC 51908

Site:
position = -194
score = 6.1316
sequence = TTTGAATACGTATGCATA

Site:
position = -345
score = 6.19586
sequence = TCTGCATACGTATGCATA

Gene: Swoo_2209: Predicted maltose-specific TonB-dependent receptor
Predicted maltose-specific TonB-dependent receptor
trpH
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217

Gene: Sden_2030: Tryptophan halogenase
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1786: Tryptophan halogenase
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908

Gene: Swoo_2208: Tryptophan halogenase
Tryptophan halogenase
susA
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3

Gene: Shewana3_2313: Neopullulanase (EC 3.2.1.135)
 
Shewanella sp MR-4

Gene: Shewmr4_2135: Neopullulanase (EC 3.2.1.135)
 
Shewanella sp MR-7

Gene: Shewmr7_2211: Neopullulanase (EC 3.2.1.135)
 
Shewanella baltica OS155

Gene: Sbal_2289: Neopullulanase (EC 3.2.1.135)
 
Shewanella denitrificans OS217

Gene: Sden_2031: Neopullulanase (EC 3.2.1.135)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1785: Neopullulanase (EC 3.2.1.135)
 
Shewanella amazonensis SB2B

Gene: Sama_1660: Neopullulanase (EC 3.2.1.135)
 
Shewanella loihica PV-4

Gene: Shew_1887: Neopullulanase (EC 3.2.1.135)
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3

Gene: swp_2674: Neopullulanase (EC 3.2.1.135)
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908

Gene: Swoo_2207: Neopullulanase (EC 3.2.1.135)
Neopullulanase (EC 3.2.1.135)
amy2
 
Shewanella oneidensis MR-1

Gene: SO_2156: Alpha-amylase (EC 3.2.1.1)
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3

Gene: Shewana3_2314: Alpha-amylase (EC 3.2.1.1)
 
Shewanella sp MR-4

Gene: Shewmr4_2136: Alpha-amylase (EC 3.2.1.1)
 
Shewanella sp MR-7

Gene: Shewmr7_2212: Alpha-amylase (EC 3.2.1.1)
 
Shewanella baltica OS155

Gene: Sbal_2290: Alpha-amylase (EC 3.2.1.1)
 
Shewanella denitrificans OS217

Gene: Sden_2032: Alpha-amylase (EC 3.2.1.1)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1784: Alpha-amylase (EC 3.2.1.1)
 
Shewanella amazonensis SB2B

Gene: Sama_1659: Alpha-amylase (EC 3.2.1.1)
 
Shewanella loihica PV-4

Gene: Shew_1886: Alpha-amylase (EC 3.2.1.1)
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3

Gene: swp_2675: Alpha-amylase (EC 3.2.1.1)
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908

Gene: Swoo_2206: Alpha-amylase (EC 3.2.1.1)
Alpha-amylase (EC 3.2.1.1)
 
CRON 5.
amyA
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
*
Shewanella denitrificans OS217

Site:
position = -112
score = 6.02583
sequence = TATGCATACGTATTCATA

Gene: Sden_1800: Cytoplasmic alpha-amylase (EC 3.2.1.1)
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Cytoplasmic alpha-amylase (EC 3.2.1.1)
 
CRON 6.
amyA2
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
*
Shewanella woodyi ATCC 51908

Site:
position = -178
score = 6.05528
sequence = AATGAATACGTATGCAAA

Gene: Swoo_3416: alpha amylase catalytic region
alpha amylase catalytic region
 
CRON 7.
omp(Mal)2
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
*
Shewanella amazonensis SB2B

Site:
position = -140
score = 6.03709
sequence = TGTGAATACGTATGCATA

Gene: Sama_0286: Predicted maltose-specific TonB-dependent receptor
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
*
Shewanella piezotolerans WP3

Site:
position = -143
score = 5.99304
sequence = TATGAATACGTATGCAGC

Gene: swp_3412: Predicted maltose-specific TonB-dependent receptor
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Predicted maltose-specific TonB-dependent receptor
pulA
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B

Gene: Sama_0287: Alpha-1,6-glucosidases, pullulanase-type
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3

Gene: swp_3411: Alpha-1,6-glucosidases, pullulanase-type
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Alpha-1,6-glucosidases, pullulanase-type
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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