Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Daci_1890 - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1 1 1
Delftia acidovorans SPH-1 1 1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2
Methylibium petroleiphilum PM1
Leptothrix cholodnii SP-6
Rhodoferax ferrireducens DSM 15236
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG697
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
*
Comamonas testosteroni KF-1

Site:
position = -107
score = 11.2746
sequence = TTCTGTACTGG-(7)-TGAATACAGTT-(6)-AACTGTGCTGT

Gene: CtesDRAFT_0888: Permease of the drug/metabolite transporter (DMT) superfamily, COG697(RhaT)
*
Delftia acidovorans SPH-1

Site:
position = -111
score = 13.4247
sequence = TTCTGTAGTGG-(8)-GCATAACAGTT-(6)-AATTGTATTGG

Gene: Daci_1891: Permease of the drug/metabolite transporter (DMT) superfamily, COG697(RhaT)
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
 
Rhodoferax ferrireducens DSM 15236
Permease of the drug/metabolite transporter (DMT) superfamily, COG697(RhaT)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD