Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LiuR - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 134 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 29 9
Shewanella putrefaciens CN-32 29 9
Shewanella sp W3-18-1 29 9
Shewanella sp ANA-3 29 9
Shewanella sp MR-4 29 9
Shewanella sp MR-7 29 9
Shewanella baltica OS155 28 8
Shewanella denitrificans OS217 29 8
Shewanella frigidimarina NCIMB 400 29 9
Shewanella amazonensis SB2B 28 8
Shewanella loihica PV-4 25 7
Shewanella pealeana ATCC 700345 27 8
Shewanella halifaxensis HAW-EB4 28 8
Shewanella piezotolerans WP3 26 8
Shewanella sediminis HAW-EB3 28 8
Shewanella woodyi ATCC 51908 27 8
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
gltB
*
Shewanella oneidensis MR-1

Site:
position = -188
score = 5.89198
sequence = GTTGACGTTAACGTCAAG

Gene: SO_1325: glutamate synthase, large subunit
*
Shewanella putrefaciens CN-32

Site:
position = -187
score = 5.78541
sequence = GTTGACGTTAACGTAACG

Gene: Sputcn32_1136: glutamate synthase, large subunit
*
Shewanella sp W3-18-1

Site:
position = -187
score = 5.86626
sequence = GTTGACGTTAACGTAATG

Gene: Sputw3181_3028: glutamate synthase, large subunit
*
Shewanella sp ANA-3

Site:
position = -189
score = 5.67885
sequence = GTTAACGTTAACGTCAAG

Gene: Shewana3_3050: glutamate synthase, large subunit
*
Shewanella sp MR-4

Site:
position = -188
score = 5.67885
sequence = GTTAACGTTAACGTCAAG

Gene: Shewmr4_2872: glutamate synthase, large subunit
*
Shewanella sp MR-7

Site:
position = -188
score = 5.67885
sequence = GTTAACGTTAACGTCAAG

Gene: Shewmr7_2954: glutamate synthase, large subunit
*
Shewanella baltica OS155

Site:
position = -189
score = 6.202
sequence = GTTGACGTTAACGTAAAG

Gene: Sbal_1178: glutamate synthase, large subunit
*
Shewanella denitrificans OS217

Site:
position = -188
score = 6.15375
sequence = GCTTACGTTAACGTAAAG

Gene: Sden_2790: glutamate synthase, large subunit
*
Shewanella frigidimarina NCIMB 400

Site:
position = -186
score = 6.202
sequence = GTTTACGTTAACGTCAAG

Gene: Sfri_2951: glutamate synthase, large subunit
*
Shewanella amazonensis SB2B

Site:
position = -191
score = 5.7651
sequence = GTTGACGTTAACGTAACC

Gene: Sama_0857: glutamate synthase, large subunit
*
Shewanella loihica PV-4

Site:
position = -178
score = 5.84373
sequence = GTTGACGTTAACGTAAGG

Gene: Shew_1032: glutamate synthase, large subunit
*
Shewanella pealeana ATCC 700345

Site:
position = -184
score = 5.80171
sequence = GTTTACGTTAAGGTAAGC

Gene: Spea_1013: glutamate synthase, large subunit
*
Shewanella halifaxensis HAW-EB4

Site:
position = -185
score = 6.15997
sequence = GTTTACGTTAAGGTAAAC

Gene: Shal_1061: glutamate synthase, large subunit
*
Shewanella piezotolerans WP3

Site:
position = -185
score = 5.98768
sequence = GTTTACGTAAAGGTAAAC

Gene: swp_3803: glutamate synthase, large subunit
*
Shewanella sediminis HAW-EB3

Site:
position = -177
score = 6.00939
sequence = GTTTACGTAAACGTCAAC

Gene: Ssed_1126: glutamate synthase, large subunit
*
Shewanella woodyi ATCC 51908

Site:
position = -179
score = 6.17627
sequence = GTTTACGTTAACGTAATG

Gene: Swoo_1221: glutamate synthase, large subunit
glutamate synthase, large subunit
gltD
 
Shewanella oneidensis MR-1

Gene: SO_1324: glutamate synthase, small subunit
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1135: glutamate synthase, small subunit
 
Shewanella sp W3-18-1

Gene: Sputw3181_3029: glutamate synthase, small subunit
 
Shewanella sp ANA-3

Gene: Shewana3_3051: glutamate synthase, small subunit
 
Shewanella sp MR-4

Gene: Shewmr4_2873: glutamate synthase, small subunit
 
Shewanella sp MR-7

Gene: Shewmr7_2955: glutamate synthase, small subunit
 
Shewanella baltica OS155

Gene: Sbal_1177: glutamate synthase, small subunit
 
Shewanella denitrificans OS217

Gene: Sden_2791: glutamate synthase, small subunit
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2952: glutamate synthase, small subunit
 
Shewanella amazonensis SB2B

Gene: Sama_0856: glutamate synthase, small subunit
 
Shewanella loihica PV-4

Gene: Shew_1031: glutamate synthase, small subunit
 
Shewanella pealeana ATCC 700345

Gene: Spea_1012: glutamate synthase, small subunit
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_1060: glutamate synthase, small subunit
 
Shewanella piezotolerans WP3

Gene: swp_3804: glutamate synthase, small subunit
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1125: glutamate synthase, small subunit
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1220: glutamate synthase, small subunit
glutamate synthase, small subunit
 
CRON 2.
thrA
*
Shewanella oneidensis MR-1

Site:
position = -372
score = 5.69397
sequence = CATTACGTTTACGTCAAC

Gene: SO_3415: aspartate kinase
*
Shewanella putrefaciens CN-32

Site:
position = -373
score = 5.78541
sequence = CGTTACGTTAACGTCAAC

Gene: Sputcn32_2735: aspartate kinase
*
Shewanella sp W3-18-1

Site:
position = -373
score = 5.78541
sequence = CGTTACGTTAACGTCAAC

Gene: Sputw3181_1277: aspartate kinase
*
Shewanella sp ANA-3

Site:
position = -373
score = 5.38332
sequence = TATTACGTTTACGTCAAC

Gene: Shewana3_1139: aspartate kinase
*
Shewanella sp MR-4

Site:
position = -373
score = 5.69397
sequence = CATTACGTTTACGTCAAC

Gene: Shewmr4_1138: aspartate kinase
*
Shewanella sp MR-7

Site:
position = -373
score = 5.69397
sequence = CATTACGTTTACGTCAAC

Gene: Shewmr7_1209: aspartate kinase
*
Shewanella baltica OS155

Site:
position = -373
score = 5.84595
sequence = GATTACGTTAACGTCAAC

Gene: Sbal_1227: aspartate kinase
*
Shewanella denitrificans OS217

Site:
position = -466
score = 6.00177
sequence = CCTTACGTTTACGTAAAG

Gene: Sden_2740: aspartate kinase
*
Shewanella frigidimarina NCIMB 400

Site:
position = -436
score = 4.83087
sequence = GTTTACGTCAACGTTAGA

Gene: Sfri_2906: aspartate kinase
*
Shewanella amazonensis SB2B

Site:
position = -363
score = 5.06827
sequence = GGTTACCTTTACGTTAAG

Gene: Sama_0905: aspartate kinase
 
Shewanella loihica PV-4

Gene: Shew_1079: aspartate kinase
*
Shewanella pealeana ATCC 700345

Site:
position = -366
score = 5.64896
sequence = GTTTACGTAAGCGTAAGC

Gene: Spea_1066: aspartate kinase
*
Shewanella halifaxensis HAW-EB4

Site:
position = -368
score = 5.17314
sequence = GTTTACGTAAGCGTAACT

Gene: Shal_1114: aspartate kinase
*
Shewanella piezotolerans WP3

Site:
position = -367
score = 5.78477
sequence = GTTTACGTTAACGTAACA

Gene: swp_3750: aspartate kinase
*
Shewanella sediminis HAW-EB3

Site:
position = -378
score = 5.12706
sequence = GCTTACGTTTACGTAACT

Gene: Ssed_1175: aspartate kinase
*
Shewanella woodyi ATCC 51908

Site:
position = -377
score = 4.75319
sequence = TTTGCCGTAAACGTAAGG

Gene: Swoo_1270: aspartate kinase
aspartate kinase
thrB
 
Shewanella oneidensis MR-1

Gene: SO_3414: homoserine kinase
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2734: homoserine kinase
 
Shewanella sp W3-18-1

Gene: Sputw3181_1278: homoserine kinase
 
Shewanella sp ANA-3

Gene: Shewana3_1140: homoserine kinase
 
Shewanella sp MR-4

Gene: Shewmr4_1139: homoserine kinase
 
Shewanella sp MR-7

Gene: Shewmr7_1210: homoserine kinase
 
Shewanella baltica OS155

Gene: Sbal_1228: homoserine kinase
 
Shewanella denitrificans OS217

Gene: Sden_2739: homoserine kinase
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2905: homoserine kinase
 
Shewanella amazonensis SB2B

Gene: Sama_0906: homoserine kinase
 
Shewanella loihica PV-4

Gene: Shew_1080: homoserine kinase
 
Shewanella pealeana ATCC 700345

Gene: Spea_1067: homoserine kinase
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_1115: homoserine kinase
 
Shewanella piezotolerans WP3

Gene: swp_3749: homoserine kinase
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1176: homoserine kinase
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1271: homoserine kinase
homoserine kinase
thrC
 
Shewanella oneidensis MR-1

Gene: SO_3413: threonine synthase
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2733: threonine synthase
 
Shewanella sp W3-18-1

Gene: Sputw3181_1279: threonine synthase
 
Shewanella sp ANA-3

Gene: Shewana3_1141: threonine synthase
 
Shewanella sp MR-4

Gene: Shewmr4_1140: threonine synthase
 
Shewanella sp MR-7

Gene: Shewmr7_1211: threonine synthase
 
Shewanella baltica OS155

Gene: Sbal_1229: threonine synthase
 
Shewanella denitrificans OS217

Gene: Sden_2738: threonine synthase
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2904: threonine synthase
 
Shewanella amazonensis SB2B

Gene: Sama_0907: threonine synthase
 
Shewanella loihica PV-4

Gene: Shew_1081: threonine synthase
 
Shewanella pealeana ATCC 700345

Gene: Spea_1068: threonine synthase
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_1116: threonine synthase
 
Shewanella piezotolerans WP3

Gene: swp_3748: threonine synthase
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1177: threonine synthase
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1272: threonine synthase
threonine synthase
 
CRON 3.
liuR
*
Shewanella oneidensis MR-1

Site:
position = -59
score = 6.00799
sequence = CTTTACCTTTACGTAAAC

Gene: SO_1898: branched chain amino acid metabolism regulator, MerR family
*
Shewanella putrefaciens CN-32

Site:
position = -59
score = 6.00799
sequence = CTTTACCTTTACGTAAAC

Gene: Sputcn32_1720: branched chain amino acid metabolism regulator, MerR family
*
Shewanella sp W3-18-1

Site:
position = -59
score = 6.00799
sequence = CTTTACCTTTACGTAAAC

Gene: Sputw3181_2305: branched chain amino acid metabolism regulator, MerR family
*
Shewanella sp ANA-3

Site:
position = -59
score = 6.00799
sequence = CTTTACCTTTACGTAAAC

Gene: Shewana3_1673: branched chain amino acid metabolism regulator, MerR family
*
Shewanella sp MR-4

Site:
position = -59
score = 6.00799
sequence = CTTTACCTTTACGTAAAC

Gene: Shewmr4_2321: branched chain amino acid metabolism regulator, MerR family
*
Shewanella sp MR-7

Site:
position = -59
score = 6.00799
sequence = CTTTACCTTTACGTAAAC

Gene: Shewmr7_2393: branched chain amino acid metabolism regulator, MerR family
*
Shewanella baltica OS155

Site:
position = -59
score = 6.00799
sequence = CTTTACCTTTACGTAAAC

Gene: Sbal_2827: branched chain amino acid metabolism regulator, MerR family
*
Shewanella denitrificans OS217

Site:
position = -58
score = 6.00799
sequence = CTTTACCTTTACGTAAAC

Gene: Sden_2244: branched chain amino acid metabolism regulator, MerR family
*
Shewanella frigidimarina NCIMB 400

Site:
position = -59
score = 6.00799
sequence = CTTTACCTTTACGTAAAC

Gene: Sfri_2726: branched chain amino acid metabolism regulator, MerR family
*
Shewanella amazonensis SB2B

Site:
position = -65
score = 6.00799
sequence = CTTTACCTTTACGTAAAC

Gene: Sama_1363: branched chain amino acid metabolism regulator, MerR family
*
Shewanella loihica PV-4

Site:
position = -63
score = 6.00799
sequence = CTTTACCTTTACGTAAAC

Gene: Shew_2569: branched chain amino acid metabolism regulator, MerR family
*
Shewanella pealeana ATCC 700345

Site:
position = -63
score = 6.00799
sequence = CTTTACCTTTACGTAAAC

Gene: Spea_2796: branched chain amino acid metabolism regulator, MerR family
*
Shewanella halifaxensis HAW-EB4

Site:
position = -62
score = 6.00799
sequence = CTTTACCTTTACGTAAAC

Gene: Shal_2901: branched chain amino acid metabolism regulator, MerR family
*
Shewanella piezotolerans WP3

Site:
position = -28
score = 6.00799
sequence = CTTTACCTTTACGTAAAC

Gene: swp_3441: branched chain amino acid metabolism regulator, MerR family
*
Shewanella sediminis HAW-EB3

Site:
position = -60
score = 6.00799
sequence = CTTTACCTTTACGTAAAC

Gene: Ssed_1459: branched chain amino acid metabolism regulator, MerR family
*
Shewanella woodyi ATCC 51908

Site:
position = -61
score = 6.00799
sequence = CTTTACCTTTACGTAAAC

Gene: Swoo_3222: branched chain amino acid metabolism regulator, MerR family
branched chain amino acid metabolism regulator, MerR family
liuA
 
Shewanella oneidensis MR-1

Gene: SO_1897: isovaleryl-CoA dehydrogenase
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1719: isovaleryl-CoA dehydrogenase
 
Shewanella sp W3-18-1

Gene: Sputw3181_2306: isovaleryl-CoA dehydrogenase
 
Shewanella sp ANA-3

Gene: Shewana3_1672: isovaleryl-CoA dehydrogenase
 
Shewanella sp MR-4

Gene: Shewmr4_2322: isovaleryl-CoA dehydrogenase
 
Shewanella sp MR-7

Gene: Shewmr7_2394: isovaleryl-CoA dehydrogenase
 
Shewanella baltica OS155

Gene: Sbal_2828: isovaleryl-CoA dehydrogenase
 
Shewanella denitrificans OS217

Gene: Sden_2245: isovaleryl-CoA dehydrogenase
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2727: isovaleryl-CoA dehydrogenase
 
Shewanella amazonensis SB2B

Gene: Sama_1362: isovaleryl-CoA dehydrogenase
 
Shewanella loihica PV-4

Gene: Shew_2570: isovaleryl-CoA dehydrogenase
 
Shewanella pealeana ATCC 700345

Gene: Spea_2797: isovaleryl-CoA dehydrogenase
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2902: isovaleryl-CoA dehydrogenase
 
Shewanella piezotolerans WP3

Gene: swp_3442: isovaleryl-CoA dehydrogenase
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1458: isovaleryl-CoA dehydrogenase
 
Shewanella woodyi ATCC 51908

Gene: Swoo_3223: isovaleryl-CoA dehydrogenase
isovaleryl-CoA dehydrogenase
liuB
 
Shewanella oneidensis MR-1

Gene: SO_1896: 3-methylcrotonyl CoA carboxylase, beta subunit
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1718: 3-methylcrotonyl CoA carboxylase, beta subunit
 
Shewanella sp W3-18-1

Gene: Sputw3181_2307: 3-methylcrotonyl CoA carboxylase, beta subunit
 
Shewanella sp ANA-3

Gene: Shewana3_1671: 3-methylcrotonyl CoA carboxylase, beta subunit
 
Shewanella sp MR-4

Gene: Shewmr4_2323: 3-methylcrotonyl CoA carboxylase, beta subunit
 
Shewanella sp MR-7

Gene: Shewmr7_2395: 3-methylcrotonyl CoA carboxylase, beta subunit
 
Shewanella baltica OS155

Gene: Sbal_2829: 3-methylcrotonyl CoA carboxylase, beta subunit
 
Shewanella denitrificans OS217

Gene: Sden_2246: 3-methylcrotonyl CoA carboxylase, beta subunit
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2728: 3-methylcrotonyl CoA carboxylase, beta subunit
 
Shewanella amazonensis SB2B

Gene: Sama_1361: 3-methylcrotonyl CoA carboxylase, beta subunit
 
Shewanella loihica PV-4

Gene: Shew_2571: 3-methylcrotonyl CoA carboxylase, beta subunit
 
Shewanella pealeana ATCC 700345

Gene: Spea_2798: 3-methylcrotonyl CoA carboxylase, beta subunit
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2903: 3-methylcrotonyl CoA carboxylase, beta subunit
 
Shewanella piezotolerans WP3

Gene: swp_3443: 3-methylcrotonyl CoA carboxylase, beta subunit
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1457: 3-methylcrotonyl CoA carboxylase, beta subunit
 
Shewanella woodyi ATCC 51908

Gene: Swoo_3224: 3-methylcrotonyl CoA carboxylase, beta subunit
3-methylcrotonyl CoA carboxylase, beta subunit
liuC
 
Shewanella oneidensis MR-1

Gene: SO_1895: methylglutaconyl-CoA hydratase
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1717: methylglutaconyl-CoA hydratase
 
Shewanella sp W3-18-1

Gene: Sputw3181_2308: methylglutaconyl-CoA hydratase
 
Shewanella sp ANA-3

Gene: Shewana3_1670: methylglutaconyl-CoA hydratase
 
Shewanella sp MR-4

Gene: Shewmr4_2324: methylglutaconyl-CoA hydratase
 
Shewanella sp MR-7

Gene: Shewmr7_2396: methylglutaconyl-CoA hydratase
 
Shewanella baltica OS155

Gene: Sbal_2830: methylglutaconyl-CoA hydratase
 
Shewanella denitrificans OS217

Gene: Sden_2247: methylglutaconyl-CoA hydratase
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2729: methylglutaconyl-CoA hydratase
 
Shewanella amazonensis SB2B

Gene: Sama_1360: methylglutaconyl-CoA hydratase
 
Shewanella loihica PV-4

Gene: Shew_2572: methylglutaconyl-CoA hydratase
 
Shewanella pealeana ATCC 700345

Gene: Spea_2799: methylglutaconyl-CoA hydratase
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2904: methylglutaconyl-CoA hydratase
 
Shewanella piezotolerans WP3

Gene: swp_3444: methylglutaconyl-CoA hydratase
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1456: methylglutaconyl-CoA hydratase
 
Shewanella woodyi ATCC 51908

Gene: Swoo_3225: methylglutaconyl-CoA hydratase
methylglutaconyl-CoA hydratase
liuD
 
Shewanella oneidensis MR-1

Gene: SO_1894: methylcrotonyl-CoA carboxylase, biotin-containing subunit
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1716: methylcrotonyl-CoA carboxylase, biotin-containing subunit
 
Shewanella sp W3-18-1

Gene: Sputw3181_2309: methylcrotonyl-CoA carboxylase, biotin-containing subunit
 
Shewanella sp ANA-3

Gene: Shewana3_1669: methylcrotonyl-CoA carboxylase, biotin-containing subunit
 
Shewanella sp MR-4

Gene: Shewmr4_2325: methylcrotonyl-CoA carboxylase, biotin-containing subunit
 
Shewanella sp MR-7

Gene: Shewmr7_2397: methylcrotonyl-CoA carboxylase, biotin-containing subunit
 
Shewanella baltica OS155

Gene: Sbal_2831: methylcrotonyl-CoA carboxylase, biotin-containing subunit
 2
Shewanella denitrificans OS217

Gene: Sden_2248: methylcrotonyl-CoA carboxylase, biotin-containing subunit

Gene: Sden_2249: methylcrotonyl-CoA carboxylase, biotin-containing subunit
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2730: methylcrotonyl-CoA carboxylase, biotin-containing subunit
 
Shewanella amazonensis SB2B

Gene: Sama_1359: methylcrotonyl-CoA carboxylase, biotin-containing subunit
 
Shewanella loihica PV-4

Gene: Shew_2573: methylcrotonyl-CoA carboxylase, biotin-containing subunit
 
Shewanella pealeana ATCC 700345

Gene: Spea_2800: methylcrotonyl-CoA carboxylase, biotin-containing subunit
 2
Shewanella halifaxensis HAW-EB4

Gene: Shal_2905: methylcrotonyl-CoA carboxylase, biotin-containing subunit

Gene: Shal_2906: methylcrotonyl-CoA carboxylase, biotin-containing subunit
 
Shewanella piezotolerans WP3

Gene: swp_3445: methylcrotonyl-CoA carboxylase, biotin-containing subunit
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1455: methylcrotonyl-CoA carboxylase, biotin-containing subunit
 
Shewanella woodyi ATCC 51908

Gene: Swoo_3226: methylcrotonyl-CoA carboxylase, biotin-containing subunit
methylcrotonyl-CoA carboxylase, biotin-containing subunit
liuE
 
Shewanella oneidensis MR-1

Gene: SO_1893: hydroxymethylglutaryl-CoA lyase
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1715: hydroxymethylglutaryl-CoA lyase
 
Shewanella sp W3-18-1

Gene: Sputw3181_2310: hydroxymethylglutaryl-CoA lyase
 
Shewanella sp ANA-3

Gene: Shewana3_1668: hydroxymethylglutaryl-CoA lyase
 
Shewanella sp MR-4

Gene: Shewmr4_2326: hydroxymethylglutaryl-CoA lyase
 
Shewanella sp MR-7

Gene: Shewmr7_2398: hydroxymethylglutaryl-CoA lyase
 
Shewanella baltica OS155

Gene: Sbal_2832: hydroxymethylglutaryl-CoA lyase
 
Shewanella denitrificans OS217

Gene: Sden_2250: hydroxymethylglutaryl-CoA lyase
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2731: hydroxymethylglutaryl-CoA lyase
 
Shewanella amazonensis SB2B

Gene: Sama_1358: hydroxymethylglutaryl-CoA lyase
 
Shewanella loihica PV-4

Gene: Shew_2574: hydroxymethylglutaryl-CoA lyase
 
Shewanella pealeana ATCC 700345

Gene: Spea_2802: hydroxymethylglutaryl-CoA lyase
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2907: hydroxymethylglutaryl-CoA lyase
 
Shewanella piezotolerans WP3

Gene: swp_3448: hydroxymethylglutaryl-CoA lyase
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1454: hydroxymethylglutaryl-CoA lyase
 
Shewanella woodyi ATCC 51908

Gene: Swoo_3227: hydroxymethylglutaryl-CoA lyase
hydroxymethylglutaryl-CoA lyase
liuF
 
Shewanella oneidensis MR-1

Gene: SO_1892: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1714: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
 
Shewanella sp W3-18-1

Gene: Sputw3181_2311: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
 
Shewanella sp ANA-3

Gene: Shewana3_1667: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
 
Shewanella sp MR-4

Gene: Shewmr4_2327: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
 
Shewanella sp MR-7

Gene: Shewmr7_2399: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
 
Shewanella baltica OS155

Gene: Sbal_2833: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
 
Shewanella denitrificans OS217

Gene: Sden_2251: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2732: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
 
Shewanella amazonensis SB2B

Gene: Sama_1357: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
 
Shewanella loihica PV-4

Gene: Shew_2575: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
 
Shewanella pealeana ATCC 700345

Gene: Spea_2803: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2908: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
 
Shewanella piezotolerans WP3

Gene: swp_3449: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1453: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
 
Shewanella woodyi ATCC 51908

Gene: Swoo_3228: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
acetyl-CoA:acetoacetate-CoA transferase, beta subunit
liuG
 
Shewanella oneidensis MR-1

Gene: SO_1891: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1713: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
 
Shewanella sp W3-18-1

Gene: Sputw3181_2312: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
 
Shewanella sp ANA-3

Gene: Shewana3_1666: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
 
Shewanella sp MR-4

Gene: Shewmr4_2328: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
 
Shewanella sp MR-7

Gene: Shewmr7_2400: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
 
Shewanella baltica OS155

Gene: Sbal_2834: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
 
Shewanella denitrificans OS217

Gene: Sden_2252: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2733: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
 
Shewanella amazonensis SB2B

Gene: Sama_1356: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
 
Shewanella loihica PV-4

Gene: Shew_2576: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
 
Shewanella pealeana ATCC 700345

Gene: Spea_2804: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2909: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
 
Shewanella piezotolerans WP3

Gene: swp_3450: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1452: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
 
Shewanella woodyi ATCC 51908

Gene: Swoo_3229: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
swp_3446
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3

Gene: swp_3446: hypothetical protein swp_3446
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
hypothetical protein swp_3446
 
CRON 4.
ivdA
*
Shewanella oneidensis MR-1

Site:
position = -96
score = 5.86431
sequence = CTTTACGTTCGCGTAAAC

Gene: SO_1677: 3-ketoacyl-CoA thiolase
*
Shewanella putrefaciens CN-32

Site:
position = -104
score = 5.86431
sequence = CTTTACGTTCGCGTAAAC

Gene: Sputcn32_1397: 3-ketoacyl-CoA thiolase
*
Shewanella sp W3-18-1

Site:
position = -104
score = 5.86431
sequence = CTTTACGTTCGCGTAAAC

Gene: Sputw3181_2704: 3-ketoacyl-CoA thiolase
*
Shewanella sp ANA-3

Site:
position = -96
score = 5.86431
sequence = CTTTACGTTCGCGTAAAC

Gene: Shewana3_2771: 3-ketoacyl-CoA thiolase
*
Shewanella sp MR-4

Site:
position = -96
score = 5.86431
sequence = CTTTACGTTCGCGTAAAC

Gene: Shewmr4_2597: 3-ketoacyl-CoA thiolase
*
Shewanella sp MR-7

Site:
position = -96
score = 5.86431
sequence = CTTTACGTTCGCGTAAAC

Gene: Shewmr7_2664: 3-ketoacyl-CoA thiolase
*
Shewanella baltica OS155

Site:
position = -100
score = 5.86431
sequence = CTTTACGTTCGCGTAAAC

Gene: Sbal_1495: 3-ketoacyl-CoA thiolase
*
Shewanella denitrificans OS217

Site:
position = -97
score = 6.19983
sequence = CTTTACGTTAGCGTAAAC

Gene: Sden_1943: 3-ketoacyl-CoA thiolase
*
Shewanella frigidimarina NCIMB 400

Site:
position = -78
score = 5.5543
sequence = CTTTACGTTCGCGTCAAC

Gene: Sfri_1338: 3-ketoacyl-CoA thiolase
*
Shewanella amazonensis SB2B

Site:
position = -110
score = 5.86431
sequence = CTTTACGTTCGCGTAAAC

Gene: Sama_1375: 3-ketoacyl-CoA thiolase
*
Shewanella loihica PV-4

Site:
position = -105
score = 5.86431
sequence = CTTTACGTTCGCGTAAAC

Gene: Shew_1667: 3-ketoacyl-CoA thiolase
*
Shewanella pealeana ATCC 700345

Site:
position = -168
score = 5.86431
sequence = CTTTACGTTCGCGTAAAC

Gene: Spea_2783: 3-ketoacyl-CoA thiolase
*
Shewanella halifaxensis HAW-EB4

Site:
position = -168
score = 5.86431
sequence = CTTTACGTTCGCGTAAAC

Gene: Shal_2878: 3-ketoacyl-CoA thiolase
*
Shewanella piezotolerans WP3

Site:
position = -206
score = 5.86431
sequence = CTTTACGTTCGCGTAAAC

Gene: swp_3387: 3-ketoacyl-CoA thiolase
*
Shewanella sediminis HAW-EB3

Site:
position = -122
score = 5.86431
sequence = CTTTACGTTCGCGTAAAC

Gene: Ssed_1473: 3-ketoacyl-CoA thiolase
*
Shewanella woodyi ATCC 51908

Site:
position = -110
score = 5.86431
sequence = CTTTACGTTCGCGTAAAC

Gene: Swoo_3202: 3-ketoacyl-CoA thiolase
3-ketoacyl-CoA thiolase
ivdB
 
Shewanella oneidensis MR-1

Gene: SO_1678: methylmalonate-semialdehyde dehydrogenase
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1398: methylmalonate-semialdehyde dehydrogenase
 
Shewanella sp W3-18-1

Gene: Sputw3181_2703: methylmalonate-semialdehyde dehydrogenase
 
Shewanella sp ANA-3

Gene: Shewana3_2770: methylmalonate-semialdehyde dehydrogenase
 
Shewanella sp MR-4

Gene: Shewmr4_2596: methylmalonate-semialdehyde dehydrogenase
 
Shewanella sp MR-7

Gene: Shewmr7_2663: methylmalonate-semialdehyde dehydrogenase
 
Shewanella baltica OS155

Gene: Sbal_1496: methylmalonate-semialdehyde dehydrogenase
 
Shewanella denitrificans OS217

Gene: Sden_1942: methylmalonate-semialdehyde dehydrogenase
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1339: methylmalonate-semialdehyde dehydrogenase
 
Shewanella amazonensis SB2B

Gene: Sama_1376: methylmalonate-semialdehyde dehydrogenase
 
Shewanella loihica PV-4

Gene: Shew_1668: methylmalonate-semialdehyde dehydrogenase
 
Shewanella pealeana ATCC 700345

Gene: Spea_2782: methylmalonate-semialdehyde dehydrogenase
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2877: methylmalonate-semialdehyde dehydrogenase
 
Shewanella piezotolerans WP3

Gene: swp_3386: methylmalonate-semialdehyde dehydrogenase
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1474: methylmalonate-semialdehyde dehydrogenase
 
Shewanella woodyi ATCC 51908

Gene: Swoo_3201: methylmalonate-semialdehyde dehydrogenase
methylmalonate-semialdehyde dehydrogenase
ivdC
 
Shewanella oneidensis MR-1

Gene: SO_1679: branched-chain acyl-CoA dehydrogenase
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1399: branched-chain acyl-CoA dehydrogenase
 
Shewanella sp W3-18-1

Gene: Sputw3181_2702: branched-chain acyl-CoA dehydrogenase
 
Shewanella sp ANA-3

Gene: Shewana3_2769: branched-chain acyl-CoA dehydrogenase
 
Shewanella sp MR-4

Gene: Shewmr4_2595: branched-chain acyl-CoA dehydrogenase
 
Shewanella sp MR-7

Gene: Shewmr7_2662: branched-chain acyl-CoA dehydrogenase
 
Shewanella baltica OS155

Gene: Sbal_1497: branched-chain acyl-CoA dehydrogenase
 
Shewanella denitrificans OS217

Gene: Sden_1941: branched-chain acyl-CoA dehydrogenase
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1340: branched-chain acyl-CoA dehydrogenase
 
Shewanella amazonensis SB2B

Gene: Sama_1377: branched-chain acyl-CoA dehydrogenase
 
Shewanella loihica PV-4

Gene: Shew_1669: branched-chain acyl-CoA dehydrogenase
 
Shewanella pealeana ATCC 700345

Gene: Spea_2781: branched-chain acyl-CoA dehydrogenase
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2876: branched-chain acyl-CoA dehydrogenase
 
Shewanella piezotolerans WP3

Gene: swp_3385: branched-chain acyl-CoA dehydrogenase
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1475: branched-chain acyl-CoA dehydrogenase
 
Shewanella woodyi ATCC 51908

Gene: Swoo_3200: branched-chain acyl-CoA dehydrogenase
branched-chain acyl-CoA dehydrogenase
ivdD
 
Shewanella oneidensis MR-1

Gene: SO_1680: enoyl-CoA hydratase
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1400: enoyl-CoA hydratase
 
Shewanella sp W3-18-1

Gene: Sputw3181_2701: enoyl-CoA hydratase
 
Shewanella sp ANA-3

Gene: Shewana3_2768: enoyl-CoA hydratase
 
Shewanella sp MR-4

Gene: Shewmr4_2594: enoyl-CoA hydratase
 
Shewanella sp MR-7

Gene: Shewmr7_2661: enoyl-CoA hydratase
 
Shewanella baltica OS155

Gene: Sbal_1498: enoyl-CoA hydratase
 
Shewanella denitrificans OS217

Gene: Sden_1940: enoyl-CoA hydratase
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1341: enoyl-CoA hydratase
 
Shewanella amazonensis SB2B

Gene: Sama_1378: enoyl-CoA hydratase
 
Shewanella loihica PV-4

Gene: Shew_1670: enoyl-CoA hydratase
 
Shewanella pealeana ATCC 700345

Gene: Spea_2780: enoyl-CoA hydratase
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2875: enoyl-CoA hydratase
 
Shewanella piezotolerans WP3

Gene: swp_3384: enoyl-CoA hydratase
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1476: enoyl-CoA hydratase
 
Shewanella woodyi ATCC 51908

Gene: Swoo_3199: enoyl-CoA hydratase
enoyl-CoA hydratase
ivdE
 
Shewanella oneidensis MR-1

Gene: SO_1681: 3-hydroxyisobutyryl-CoA hydrolase
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1401: 3-hydroxyisobutyryl-CoA hydrolase
 
Shewanella sp W3-18-1

Gene: Sputw3181_2700: 3-hydroxyisobutyryl-CoA hydrolase
 
Shewanella sp ANA-3

Gene: Shewana3_2767: 3-hydroxyisobutyryl-CoA hydrolase
 
Shewanella sp MR-4

Gene: Shewmr4_2593: 3-hydroxyisobutyryl-CoA hydrolase
 
Shewanella sp MR-7

Gene: Shewmr7_2660: 3-hydroxyisobutyryl-CoA hydrolase
 
Shewanella baltica OS155

Gene: Sbal_1499: 3-hydroxyisobutyryl-CoA hydrolase
 
Shewanella denitrificans OS217

Gene: Sden_1939: 3-hydroxyisobutyryl-CoA hydrolase
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1342: 3-hydroxyisobutyryl-CoA hydrolase
 
Shewanella amazonensis SB2B

Gene: Sama_1379: 3-hydroxyisobutyryl-CoA hydrolase
 
Shewanella loihica PV-4

Gene: Shew_1671: 3-hydroxyisobutyryl-CoA hydrolase
 
Shewanella pealeana ATCC 700345

Gene: Spea_2779: 3-hydroxyisobutyryl-CoA hydrolase
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2874: 3-hydroxyisobutyryl-CoA hydrolase
 
Shewanella piezotolerans WP3

Gene: swp_3383: 3-hydroxyisobutyryl-CoA hydrolase
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1477: 3-hydroxyisobutyryl-CoA hydrolase
 
Shewanella woodyi ATCC 51908

Gene: Swoo_3198: 3-hydroxyisobutyryl-CoA hydrolase
3-hydroxyisobutyryl-CoA hydrolase
ivdF
 
Shewanella oneidensis MR-1

Gene: SO_1682: 3-hydroxyisobutyrate dehydrogenase
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1402: 3-hydroxyisobutyrate dehydrogenase
 
Shewanella sp W3-18-1

Gene: Sputw3181_2699: 3-hydroxyisobutyrate dehydrogenase
 
Shewanella sp ANA-3

Gene: Shewana3_2766: 3-hydroxyisobutyrate dehydrogenase
 
Shewanella sp MR-4

Gene: Shewmr4_2592: 3-hydroxyisobutyrate dehydrogenase
 
Shewanella sp MR-7

Gene: Shewmr7_2659: 3-hydroxyisobutyrate dehydrogenase
 
Shewanella baltica OS155

Gene: Sbal_1500: 3-hydroxyisobutyrate dehydrogenase
 
Shewanella denitrificans OS217

Gene: Sden_1938: 3-hydroxyisobutyrate dehydrogenase
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1343: 3-hydroxyisobutyrate dehydrogenase
 
Shewanella amazonensis SB2B

Gene: Sama_1380: 3-hydroxyisobutyrate dehydrogenase
 
Shewanella loihica PV-4

Gene: Shew_1672: 3-hydroxyisobutyrate dehydrogenase
 
Shewanella pealeana ATCC 700345

Gene: Spea_2778: 3-hydroxyisobutyrate dehydrogenase
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2873: 3-hydroxyisobutyrate dehydrogenase
 
Shewanella piezotolerans WP3

Gene: swp_3382: 3-hydroxyisobutyrate dehydrogenase
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1478: 3-hydroxyisobutyrate dehydrogenase
 
Shewanella woodyi ATCC 51908

Gene: Swoo_3197: 3-hydroxyisobutyrate dehydrogenase
3-hydroxyisobutyrate dehydrogenase
ivdG
 
Shewanella oneidensis MR-1

Gene: SO_1683: 3-hydroxyacyl-CoA dehydrogenase
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1403: 3-hydroxyacyl-CoA dehydrogenase
 
Shewanella sp W3-18-1

Gene: Sputw3181_2698: 3-hydroxyacyl-CoA dehydrogenase
 
Shewanella sp ANA-3

Gene: Shewana3_2765: 3-hydroxyacyl-CoA dehydrogenase
 
Shewanella sp MR-4

Gene: Shewmr4_2591: 3-hydroxyacyl-CoA dehydrogenase
 
Shewanella sp MR-7

Gene: Shewmr7_2658: 3-hydroxyacyl-CoA dehydrogenase
 
Shewanella baltica OS155

Gene: Sbal_1501: 3-hydroxyacyl-CoA dehydrogenase
 
Shewanella denitrificans OS217

Gene: Sden_1937: 3-hydroxyacyl-CoA dehydrogenase
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1344: 3-hydroxyacyl-CoA dehydrogenase
 
Shewanella amazonensis SB2B

Gene: Sama_1381: 3-hydroxyacyl-CoA dehydrogenase
 
Shewanella loihica PV-4

Gene: Shew_1673: 3-hydroxyacyl-CoA dehydrogenase
 
Shewanella pealeana ATCC 700345

Gene: Spea_2777: 3-hydroxyacyl-CoA dehydrogenase
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2872: 3-hydroxyacyl-CoA dehydrogenase
 
Shewanella piezotolerans WP3

Gene: swp_3381: 3-hydroxyacyl-CoA dehydrogenase
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1479: 3-hydroxyacyl-CoA dehydrogenase
 
Shewanella woodyi ATCC 51908

Gene: Swoo_3196: 3-hydroxyacyl-CoA dehydrogenase
3-hydroxyacyl-CoA dehydrogenase
 
CRON 5.
tyrR
*
Shewanella oneidensis MR-1

Site:
position = -122
score = 6.02754
sequence = CTTTACGTTTGCGTAAAC

Gene: SO_1669: aromatic amino acid biosynthesis/transport transciptional regulator
*
Shewanella putrefaciens CN-32

Site:
position = -121
score = 6.02754
sequence = GTTTACGTTTGCGTAAAG

Gene: Sputcn32_1388: aromatic amino acid biosynthesis/transport transciptional regulator
*
Shewanella sp W3-18-1

Site:
position = -121
score = 6.02754
sequence = GTTTACGTTTGCGTAAAG

Gene: Sputw3181_2713: aromatic amino acid biosynthesis/transport transciptional regulator
*
Shewanella sp ANA-3

Site:
position = -137
score = 5.71689
sequence = TTTTACGTTTGCGTAAAC

Gene: Shewana3_2779: aromatic amino acid biosynthesis/transport transciptional regulator
*
Shewanella sp MR-4

Site:
position = -137
score = 5.71689
sequence = TTTTACGTTTGCGTAAAC

Gene: Shewmr4_2605: aromatic amino acid biosynthesis/transport transciptional regulator
*
Shewanella sp MR-7

Site:
position = -137
score = 5.71689
sequence = TTTTACGTTTGCGTAAAC

Gene: Shewmr7_2672: aromatic amino acid biosynthesis/transport transciptional regulator
 
Shewanella baltica OS155

Gene: Sbal_1486: aromatic amino acid biosynthesis/transport transciptional regulator
 
Shewanella denitrificans OS217

Gene: Sden_2593: aromatic amino acid biosynthesis/transport transciptional regulator
*
Shewanella frigidimarina NCIMB 400

Site:
position = -140
score = 5.07785
sequence = TGTTACGTTAACGTAACA

Gene: Sfri_1330: aromatic amino acid biosynthesis/transport transciptional regulator
 
Shewanella amazonensis SB2B

Gene: Sama_2220: aromatic amino acid biosynthesis/transport transciptional regulator
 
Shewanella loihica PV-4

Gene: Shew_1437: aromatic amino acid biosynthesis/transport transciptional regulator
 
Shewanella pealeana ATCC 700345

Gene: Spea_1450: aromatic amino acid biosynthesis/transport transciptional regulator
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_1533: aromatic amino acid biosynthesis/transport transciptional regulator
 
Shewanella piezotolerans WP3

Gene: swp_1652: aromatic amino acid biosynthesis/transport transciptional regulator
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2928: aromatic amino acid biosynthesis/transport transciptional regulator
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1717: aromatic amino acid biosynthesis/transport transciptional regulator
aromatic amino acid biosynthesis/transport transciptional regulator
 
CRON 6.
etfB
*
Shewanella oneidensis MR-1

Site:
position = -98
score = 5.24104
sequence = ATTGACGTTAACGTTAAC

Gene: SO_3145: electron transfer flavoprotein, beta subunit
*
Shewanella putrefaciens CN-32

Site:
position = -98
score = 5.45417
sequence = ATTGACGTTAACGTCAAC

Gene: Sputcn32_2511: electron transfer flavoprotein, beta subunit
*
Shewanella sp W3-18-1

Site:
position = -98
score = 5.24104
sequence = ATTGACGTTAACGTTAAC

Gene: Sputw3181_1497: electron transfer flavoprotein, beta subunit
*
Shewanella sp ANA-3

Site:
position = -98
score = 5.65854
sequence = GTTGACGTTAACGTTAAC

Gene: Shewana3_1405: electron transfer flavoprotein, beta subunit
*
Shewanella sp MR-4

Site:
position = -98
score = 5.65854
sequence = GTTGACGTTAACGTTAAC

Gene: Shewmr4_1352: electron transfer flavoprotein, beta subunit
*
Shewanella sp MR-7

Site:
position = -98
score = 5.65854
sequence = GTTGACGTTAACGTTAAC

Gene: Shewmr7_1417: electron transfer flavoprotein, beta subunit
*
Shewanella baltica OS155

Site:
position = -98
score = 5.65854
sequence = GTTGACGTTAACGTTAAC

Gene: Sbal_2847: electron transfer flavoprotein, beta subunit
*
Shewanella denitrificans OS217

Site:
position = -97
score = 5.87167
sequence = GTTGACGTTAACGTCAAC

Gene: Sden_2539: electron transfer flavoprotein, beta subunit
*
Shewanella frigidimarina NCIMB 400

Site:
position = -99
score = 5.24104
sequence = ATTGACGTTAACGTTAAC

Gene: Sfri_2748: electron transfer flavoprotein, beta subunit
*
Shewanella amazonensis SB2B

Site:
position = -106
score = 5.48625
sequence = GTTGACGTTTACGTTAAC

Gene: Sama_1169: electron transfer flavoprotein, beta subunit
*
Shewanella loihica PV-4

Site:
position = -100
score = 5.87167
sequence = GTTGACGTTAACGTCAAC

Gene: Shew_2584: electron transfer flavoprotein, beta subunit
*
Shewanella pealeana ATCC 700345

Site:
position = -121
score = 5.65854
sequence = GTTGACGTTAACGTTAAC

Gene: Spea_2855: electron transfer flavoprotein, beta subunit
*
Shewanella halifaxensis HAW-EB4

Site:
position = -120
score = 5.65854
sequence = GTTGACGTTAACGTTAAC

Gene: Shal_2945: electron transfer flavoprotein, beta subunit
*
Shewanella piezotolerans WP3

Site:
position = -116
score = 5.87167
sequence = GTTGACGTTAACGTCAAC

Gene: swp_3472: electron transfer flavoprotein, beta subunit
*
Shewanella sediminis HAW-EB3

Site:
position = -96
score = 5.65854
sequence = GTTGACGTTAACGTTAAC

Gene: Ssed_1445: electron transfer flavoprotein, beta subunit
*
Shewanella woodyi ATCC 51908

Site:
position = -99
score = 5.65854
sequence = GTTGACGTTAACGTTAAC

Gene: Swoo_3236: electron transfer flavoprotein, beta subunit
electron transfer flavoprotein, beta subunit
etfA
 
Shewanella oneidensis MR-1

Gene: SO_3144: electron transfer flavoprotein, alpha subunit
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2510: electron transfer flavoprotein, alpha subunit
 
Shewanella sp W3-18-1

Gene: Sputw3181_1498: electron transfer flavoprotein, alpha subunit
 
Shewanella sp ANA-3

Gene: Shewana3_1406: electron transfer flavoprotein, alpha subunit
 
Shewanella sp MR-4

Gene: Shewmr4_1353: electron transfer flavoprotein, alpha subunit
 
Shewanella sp MR-7

Gene: Shewmr7_1418: electron transfer flavoprotein, alpha subunit
 
Shewanella baltica OS155

Gene: Sbal_2846: electron transfer flavoprotein, alpha subunit
 
Shewanella denitrificans OS217

Gene: Sden_2538: electron transfer flavoprotein, alpha subunit
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2747: electron transfer flavoprotein, alpha subunit
 
Shewanella amazonensis SB2B

Gene: Sama_1170: electron transfer flavoprotein, alpha subunit
 
Shewanella loihica PV-4

Gene: Shew_2583: electron transfer flavoprotein, alpha subunit
 
Shewanella pealeana ATCC 700345

Gene: Spea_2854: electron transfer flavoprotein, alpha subunit
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2944: electron transfer flavoprotein, alpha subunit
 
Shewanella piezotolerans WP3

Gene: swp_3471: electron transfer flavoprotein, alpha subunit
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1446: electron transfer flavoprotein, alpha subunit
 
Shewanella woodyi ATCC 51908

Gene: Swoo_3235: electron transfer flavoprotein, alpha subunit
electron transfer flavoprotein, alpha subunit
 
CRON 7.
bkdA1
*
Shewanella oneidensis MR-1

Site:
position = -90
score = 6.17627
sequence = GTTTACGTTAACGTAATG

Gene: SO_2339: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
*
Shewanella putrefaciens CN-32

Site:
position = -90
score = 6.17627
sequence = GTTTACGTTAACGTAATG

Gene: Sputcn32_1885: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
*
Shewanella sp W3-18-1

Site:
position = -90
score = 6.17627
sequence = GTTTACGTTAACGTAATG

Gene: Sputw3181_2123: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
*
Shewanella sp ANA-3

Site:
position = -90
score = 6.17627
sequence = GTTTACGTTAACGTAATG

Gene: Shewana3_2131: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
*
Shewanella sp MR-4

Site:
position = -90
score = 6.17627
sequence = GTTTACGTTAACGTAATG

Gene: Shewmr4_2028: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
*
Shewanella sp MR-7

Site:
position = -90
score = 6.17627
sequence = GTTTACGTTAACGTAATG

Gene: Shewmr7_1947: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
*
Shewanella baltica OS155

Site:
position = -90
score = 6.17627
sequence = GTTTACGTTAACGTAATG

Gene: Sbal_2222: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
*
Shewanella denitrificans OS217

Site:
position = -83
score = 6.17627
sequence = GTTTACGTTAACGTAATG

Gene: Sden_1786: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
*
Shewanella frigidimarina NCIMB 400

Site:
position = -86
score = 6.17627
sequence = GTTTACGTTAACGTAATG

Gene: Sfri_1935: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
*
Shewanella amazonensis SB2B

Site:
position = -81
score = 6.17627
sequence = GTTTACGTTAACGTAATG

Gene: Sama_1709: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
*
Shewanella loihica PV-4

Site:
position = -105
score = 5.65761
sequence = GTTTACGTTAACGTAACT

Gene: Shew_1925: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
*
Shewanella pealeana ATCC 700345

Site:
position = -91
score = 6.17627
sequence = GTTTACGTTAACGTAATG

Gene: Spea_2246: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
*
Shewanella halifaxensis HAW-EB4

Site:
position = -92
score = 6.17627
sequence = GTTTACGTTAACGTAATG

Gene: Shal_2234: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
*
Shewanella piezotolerans WP3

Site:
position = -92
score = 6.17627
sequence = GTTTACGTTAACGTAATG

Gene: swp_2606: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
*
Shewanella sediminis HAW-EB3

Site:
position = -103
score = 6.17627
sequence = GTTTACGTTAACGTAATG

Gene: Ssed_2329: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
*
Shewanella woodyi ATCC 51908

Site:
position = -101
score = 6.17627
sequence = GTTTACGTTAACGTAATG

Gene: Swoo_2278: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
bkdA2
 
Shewanella oneidensis MR-1

Gene: SO_2340: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1886: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
 
Shewanella sp W3-18-1

Gene: Sputw3181_2122: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
 
Shewanella sp ANA-3

Gene: Shewana3_2130: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
 
Shewanella sp MR-4

Gene: Shewmr4_2027: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
 
Shewanella sp MR-7

Gene: Shewmr7_1948: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
 
Shewanella baltica OS155

Gene: Sbal_2221: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
 
Shewanella denitrificans OS217

Gene: Sden_1787: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1936: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
 
Shewanella amazonensis SB2B

Gene: Sama_1710: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
 
Shewanella loihica PV-4

Gene: Shew_1926: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
 
Shewanella pealeana ATCC 700345

Gene: Spea_2245: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2233: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
 
Shewanella piezotolerans WP3

Gene: swp_2605: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2328: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
 
Shewanella woodyi ATCC 51908

Gene: Swoo_2279: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
bkdB
 
Shewanella oneidensis MR-1

Gene: SO_2341: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1887: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
 
Shewanella sp W3-18-1

Gene: Sputw3181_2121: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
 
Shewanella sp ANA-3

Gene: Shewana3_2129: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
 
Shewanella sp MR-4

Gene: Shewmr4_2026: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
 
Shewanella sp MR-7

Gene: Shewmr7_1949: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
 
Shewanella baltica OS155

Gene: Sbal_2220: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
 
Shewanella denitrificans OS217

Gene: Sden_1788: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1937: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
 
Shewanella amazonensis SB2B

Gene: Sama_1711: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
 
Shewanella loihica PV-4

Gene: Shew_1927: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
 
Shewanella pealeana ATCC 700345

Gene: Spea_2244: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2232: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
 
Shewanella piezotolerans WP3

Gene: swp_2604: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2327: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
 
Shewanella woodyi ATCC 51908

Gene: Swoo_2280: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
 
CRON 8.
ldh
*
Shewanella oneidensis MR-1

Site:
position = -171
score = 6.00177
sequence = CCTTACGTTTACGTAAAG

Gene: SO_2638: leucine dehydrogenase
*
Shewanella putrefaciens CN-32

Site:
position = -172
score = 5.98146
sequence = GCTTACGTTTACGTAAAG

Gene: Sputcn32_2238: leucine dehydrogenase
*
Shewanella sp W3-18-1

Site:
position = -172
score = 5.98146
sequence = GCTTACGTTTACGTAAAG

Gene: Sputw3181_1771: leucine dehydrogenase
*
Shewanella sp ANA-3

Site:
position = -171
score = 6.00177
sequence = CCTTACGTTTACGTAAAG

Gene: Shewana3_1742: leucine dehydrogenase
*
Shewanella sp MR-4

Site:
position = -171
score = 6.00177
sequence = CCTTACGTTTACGTAAAG

Gene: Shewmr4_1598: leucine dehydrogenase
*
Shewanella sp MR-7

Site:
position = -171
score = 6.00177
sequence = CCTTACGTTTACGTAAAG

Gene: Shewmr7_1673: leucine dehydrogenase
*
Shewanella baltica OS155

Site:
position = -151
score = 5.98146
sequence = GCTTACGTTTACGTAAAG

Gene: Sbal_2483: leucine dehydrogenase
*
Shewanella denitrificans OS217

Site:
position = -157
score = 6.36003
sequence = CTTTACGTTTACGTAAAG

Gene: Sden_1823: leucine dehydrogenase
*
Shewanella frigidimarina NCIMB 400

Site:
position = -195
score = 6.36003
sequence = CTTTACGTTTACGTAAAG

Gene: Sfri_2265: leucine dehydrogenase
*
Shewanella amazonensis SB2B

Site:
position = -164
score = 6.04324
sequence = CTTTACGTTGACGTAAAG

Gene: Sama_2067: leucine dehydrogenase
*
Shewanella loihica PV-4

Site:
position = -174
score = 6.53232
sequence = CTTTACGTTAACGTAAAG

Gene: Shew_1555: leucine dehydrogenase
*
Shewanella pealeana ATCC 700345

Site:
position = -174
score = 6.53232
sequence = CTTTACGTTAACGTAAAG

Gene: Spea_2543: leucine dehydrogenase
*
Shewanella halifaxensis HAW-EB4

Site:
position = -174
score = 6.53232
sequence = CTTTACGTTAACGTAAAG

Gene: Shal_1711: leucine dehydrogenase
*
Shewanella piezotolerans WP3

Site:
position = -175
score = 6.53232
sequence = CTTTACGTTAACGTAAAG

Gene: swp_1857: leucine dehydrogenase
*
Shewanella sediminis HAW-EB3

Site:
position = -173
score = 6.53232
sequence = CTTTACGTTAACGTAAAG

Gene: Ssed_1877: leucine dehydrogenase
*
Shewanella woodyi ATCC 51908

Site:
position = -174
score = 5.7845
sequence = ATTGACGTTAACGTAAAG

Gene: Swoo_2710: leucine dehydrogenase
leucine dehydrogenase
 
CRON 9.
aceB
*
Shewanella oneidensis MR-1

Site:
position = -524
score = 6.02907
sequence = GTTTACGTAAACGTAAAA

Gene: SO_1483: malate synthase A
*
Shewanella putrefaciens CN-32

Site:
position = -456
score = 6.02907
sequence = GTTTACGTAAACGTAAAA

Gene: Sputcn32_1238: malate synthase A
*
Shewanella sp W3-18-1

Site:
position = -455
score = 6.02907
sequence = GTTTACGTAAACGTAAAA

Gene: Sputw3181_2866: malate synthase A
*
Shewanella sp ANA-3

Site:
position = -524
score = 5.61248
sequence = GTTTACGTAAACGTAACA

Gene: Shewana3_2943: malate synthase A
*
Shewanella sp MR-4

Site:
position = -524
score = 5.69333
sequence = GTTTACGTAAACGTAATA

Gene: Shewmr4_2767: malate synthase A
*
Shewanella sp MR-7

Site:
position = -524
score = 5.69333
sequence = GTTTACGTAAACGTAATA

Gene: Shewmr7_2845: malate synthase A
*
Shewanella baltica OS155

Site:
position = -532
score = 5.71905
sequence = GTTTACGTAAACGTCAAA

Gene: Sbal_1316: malate synthase A
*
Shewanella denitrificans OS217

Site:
position = -487
score = 5.67081
sequence = GTTTACGTAAACGTAAGA

Gene: Sden_1245: malate synthase A
*
Shewanella frigidimarina NCIMB 400

Site:
position = -615
score = 5.6328
sequence = TGTTACGTTTACGTAAAG

Gene: Sfri_1101: malate synthase A
*
Shewanella amazonensis SB2B

Site:
position = -516
score = 5.33909
sequence = GTTTACGTAAAGGTAAGA

Gene: Sama_2381: malate synthase A
*
Shewanella loihica PV-4

Site:
position = -544
score = 5.71905
sequence = GTTTACGTAAACGTCAAA

Gene: Shew_1275: malate synthase A
*
Shewanella pealeana ATCC 700345

Site:
position = -573
score = 5.00088
sequence = TGTTACGTTTCCGTAAAC

Gene: Spea_1290: malate synthase A
*
Shewanella halifaxensis HAW-EB4

Site:
position = -609
score = 4.93517
sequence = GTTAACGTAAACGTTAGG

Gene: Shal_1352: malate synthase A
*
Shewanella piezotolerans WP3

Site:
position = -564
score = 5.55276
sequence = TTTTACGTTAACGTAAGA

Gene: swp_1433: malate synthase A
*
Shewanella sediminis HAW-EB3

Site:
position = -523
score = 5.08934
sequence = GTTAACGTAAACGTAACA

Gene: Ssed_1414: malate synthase A
*
Shewanella woodyi ATCC 51908

Site:
position = -553
score = 5.36161
sequence = GTTTACGTAAAGGTAATA

Gene: Swoo_1528: malate synthase A
malate synthase A
aceA
 
Shewanella oneidensis MR-1

Gene: SO_1484: isocitrate lyase
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1239: isocitrate lyase
 
Shewanella sp W3-18-1

Gene: Sputw3181_2865: isocitrate lyase
 
Shewanella sp ANA-3

Gene: Shewana3_2942: isocitrate lyase
 
Shewanella sp MR-4

Gene: Shewmr4_2766: isocitrate lyase
 
Shewanella sp MR-7

Gene: Shewmr7_2844: isocitrate lyase
 
Shewanella baltica OS155

Gene: Sbal_1317: isocitrate lyase
 
Shewanella denitrificans OS217

Gene: Sden_1246: isocitrate lyase
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1102: isocitrate lyase
 
Shewanella amazonensis SB2B

Gene: Sama_2380: isocitrate lyase
 
Shewanella loihica PV-4

Gene: Shew_1276: isocitrate lyase
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1415: isocitrate lyase
 
Shewanella woodyi ATCC 51908
isocitrate lyase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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