Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxW - Burkholderia

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector: Pyridoxal-5-phosphate
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 14 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Burkholderia pseudomallei K96243 1 1
Burkholderia mallei ATCC 23344 1 1
Burkholderia sp. 383 2 2
Burkholderia cepacia AMMD 2 2
Burkholderia glumae BGR1 1 1
Burkholderia vietnamiensis G4 1 1
Burkholderia xenovorans LB400 2 2
Burkholderia phymatum STM815 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdxO
*
Burkholderia pseudomallei K96243

Site:
position = -103
score = 11.6405
sequence = CGTGGCTCCAA-(13)-CATGGATCTAT-(2)-ATGGTGCCACA

Site:
position = -67
score = 8.31019
sequence = CATGGTGCCAC-(13)-TCGAGCTCTTC-(2)-AACGAACATGC

Gene: BPSS0727: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
*
Burkholderia mallei ATCC 23344

Site:
position = -67
score = 8.31019
sequence = CATGGTGCCAC-(13)-TCGAGCTCTTC-(2)-AACGAACATGC

Site:
position = -103
score = 11.6405
sequence = CGTGGCTCCAA-(13)-CATGGATCTAT-(2)-ATGGTGCCACA

Gene: BMAA1397: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Burkholderia sp. 383
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
 
Burkholderia phymatum STM815
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
CRON 2.
PF00583
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
*
Burkholderia sp. 383

Site:
position = -125
score = 11.3425
sequence = CGTGGCACCAT-(13)-CATGGGCCTAC-(2)-ATGGGGCCTCG

Gene: Bcep18194_B2917: GCN5-related N-acetyltransferase
*
Burkholderia cepacia AMMD

Site:
position = -131
score = 11.1003
sequence = CGTGGCTCCAG-(13)-CATGGGTCTAC-(2)-ATGGTGCCACG

Gene: Bamb_5125: GCN5-related N-acetyltransferase
 
Burkholderia glumae BGR1

Gene: bglu_1g32800: GCN5-related N-acetyltransferase
 
Burkholderia vietnamiensis G4
*
Burkholderia xenovorans LB400

Site:
position = -98
score = 8.98311
sequence = TGTGGCTCCAG-(13)-GGTGGAGCTAA-(2)-ATGGCGCGACA

Gene: Bxe_B0193: GCN5-related N-acetyltransferase
*
Burkholderia phymatum STM815

Site:
position = -99
score = 11.7281
sequence = CGTGGCTCCAT-(13)-GGTGGAGCTAA-(2)-ATGGTGCCACA

Gene: Bphy_4113: GCN5-related N-acetyltransferase
GCN5-related N-acetyltransferase
 
CRON 3.
PF00583
 
Burkholderia pseudomallei K96243

Gene: BPSS1459: GCN5-related N-acetyltransferase
 
Burkholderia mallei ATCC 23344

Gene: BMAA0787: GCN5-related N-acetyltransferase
*
Burkholderia sp. 383

Site:
position = -68
score = 14.4569
sequence = CGTGGCACCAT-(13)-TCTGGCGCTTC-(2)-ATGGTACCTCG

Gene: Bcep18194_B1329: GCN5-related N-acetyltransferase
*
Burkholderia cepacia AMMD

Site:
position = -68
score = 14.4569
sequence = CGTGGCACCAT-(13)-TCTGGCGCTTC-(2)-ATGGTACCTCG

Gene: Bamb_3951: GCN5-related N-acetyltransferase
*
Burkholderia glumae BGR1

Site:
position = -94
score = 9.5948
sequence = CGTGGCACCAG-(13)-ACGGGTTCTTC-(2)-TTCGGGCCGCG

Gene: bglu_2g15330: GCN5-related N-acetyltransferase
*
Burkholderia vietnamiensis G4

Site:
position = -117
score = 14.5943
sequence = CGTGGCACCAT-(13)-TCTGGCGCTTT-(2)-ATGGTACCTCG

Gene: Bcep1808_5060: GCN5-related N-acetyltransferase
*
Burkholderia xenovorans LB400

Site:
position = -104
score = 11.3807
sequence = GCTGGATCTAT-(13)-GGTGGATCTTT-(2)-AACATACCACG

Gene: Bxe_B0245: GCN5-related N-acetyltransferase
*
Burkholderia phymatum STM815

Site:
position = -107
score = 10.1116
sequence = GCTGGCTCCAT-(13)-TCTGGTTCTTA-(2)-AGCGCGCGACG

Gene: Bphy_4081: GCN5-related N-acetyltransferase
GCN5-related N-acetyltransferase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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