Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog HypR - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: activator (repressor)
Biological process: Proline and 4-hydrohyproline utilization
Effector: Proline; 4-hydroxyproline
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 96 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 1 1
Shewanella putrefaciens CN-32 1 1
Shewanella sp W3-18-1 1 1
Shewanella sp ANA-3 1 1
Shewanella sp MR-4 1 1
Shewanella sp MR-7 1 1
Shewanella baltica OS155 1 1
Shewanella denitrificans OS217 2 2
Shewanella frigidimarina NCIMB 400 3 3
Shewanella amazonensis SB2B 11 7
Shewanella loihica PV-4 14 10
Shewanella pealeana ATCC 700345 14 11
Shewanella halifaxensis HAW-EB4 14 11
Shewanella piezotolerans WP3 14 11
Shewanella sediminis HAW-EB3 12 8
Shewanella woodyi ATCC 51908 13 9
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
colA2
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
*
Shewanella amazonensis SB2B

Site:
position = -48
score = 3.71162
sequence = AAAATATACAAT

Gene: Sama_1517: Microbial collagenase, secreted (EC 3.4.24.3)
*
Shewanella loihica PV-4

Site:
position = -28
score = 4.87792
sequence = ATTGTATGCAAA

Gene: Shew_3732: Microbial collagenase, secreted (EC 3.4.24.3)
*
Shewanella pealeana ATCC 700345

Site:
position = -107
score = 4.7107
sequence = ATTGTATTCAAT

Gene: Spea_0035: Microbial collagenase, secreted (EC 3.4.24.3)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -43
score = 4.7107
sequence = ATTGTATTCAAT

Gene: Shal_0031: Microbial collagenase, secreted (EC 3.4.24.3)
*
Shewanella piezotolerans WP3

Site:
position = -71
score = 3.43173
sequence = GTTGTATACATC

Site:
position = -30
score = 4.65457
sequence = ATTGTATCCAAA

Gene: swp_0061: Microbial collagenase, secreted (EC 3.4.24.3)
*
Shewanella sediminis HAW-EB3

Site:
position = -28
score = 4.87792
sequence = ATTGTATGCAAA

Gene: Ssed_0039: Microbial collagenase, secreted (EC 3.4.24.3)
*
Shewanella woodyi ATCC 51908

Site:
position = -28
score = 4.65457
sequence = ATTGTATCCAAA

Gene: Swoo_0042: Microbial collagenase, secreted (EC 3.4.24.3)
Microbial collagenase, secreted (EC 3.4.24.3)
 
CRON 2.
hypD2
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
*
Shewanella pealeana ATCC 700345

Site:
position = -52
score = 5.09423
sequence = ATTTTATACAAT

Gene: Spea_1655: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
 
Shewanella halifaxensis HAW-EB4
*
Shewanella piezotolerans WP3

Site:
position = -36
score = 4.50324
sequence = AATGTATGCAAA

Gene: swp_1907: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
 
CRON 3.
prdP
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
*
Shewanella denitrificans OS217

Site:
position = -50
score = 5.32149
sequence = ATTGTATACAAT

Gene: Sden_0888: Proline dipeptidase
*
Shewanella frigidimarina NCIMB 400

Site:
position = -138
score = 5.32149
sequence = ATTGTATACAAT

Gene: Sfri_3046: Proline dipeptidase
 
Shewanella amazonensis SB2B

Gene: Sama_0688: Proline dipeptidase
*
Shewanella loihica PV-4

Site:
position = -93
score = 4.73299
sequence = TTTGTATACATT

Gene: Shew_0955: Proline dipeptidase
 
Shewanella pealeana ATCC 700345

Gene: Spea_0922: Proline dipeptidase
*
Shewanella halifaxensis HAW-EB4

Site:
position = -125
score = 3.57787
sequence = TTTGTATATTTT

Gene: Shal_0974: Proline dipeptidase
 
Shewanella piezotolerans WP3

Gene: swp_4195: Proline dipeptidase
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1028: Proline dipeptidase
*
Shewanella woodyi ATCC 51908

Site:
position = -126
score = 3.57787
sequence = TTTGTATATTTT

Gene: Swoo_1099: Proline dipeptidase
Proline dipeptidase
 
CRON 4.
omp2 (COG1629)
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
*
Shewanella piezotolerans WP3

Site:
position = -149
score = 4.56517
sequence = ACTGTATAAAAT

Gene: swp_3286: TonB-dependent receptor
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
TonB-dependent receptor
 
CRON 5.
colA1
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
*
Shewanella amazonensis SB2B

Site:
position = -38
score = 4.96115
sequence = ATTGCATACAAT

Gene: Sama_1077: Microbial collagenase, secreted (EC 3.4.24.3)
*
Shewanella loihica PV-4

Site:
position = -51
score = 5.018
sequence = ATTTTATACAAA

Gene: Shew_2743: Microbial collagenase, secreted (EC 3.4.24.3)
*
Shewanella pealeana ATCC 700345

Site:
position = -5
score = 5.06772
sequence = ATTGTATGCAAA

Gene: Spea_2966: Microbial collagenase, secreted (EC 3.4.24.3)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -5
score = 5.06772
sequence = ATTGTATGCAAA

Gene: Shal_3056: Microbial collagenase, secreted (EC 3.4.24.3)
*
Shewanella piezotolerans WP3

Site:
position = -35
score = 5.06772
sequence = ATTGTATGCAAA

Gene: swp_1269: Microbial collagenase, secreted (EC 3.4.24.3)
*
Shewanella sediminis HAW-EB3

Site:
position = -35
score = 5.36724
sequence = ATTGTATACAAA

Gene: Ssed_3300: Microbial collagenase, secreted (EC 3.4.24.3)
*
Shewanella woodyi ATCC 51908

Site:
position = -35
score = 4.57853
sequence = ACTTTATACAAT

Gene: Swoo_3449: Microbial collagenase, secreted (EC 3.4.24.3)
Microbial collagenase, secreted (EC 3.4.24.3)
 
CRON 6.
hypE2
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
*
Shewanella amazonensis SB2B

Site:
position = -33
score = 4.55693
sequence = ATTGCATACATT

Site:
position = -106
score = 5.32149
sequence = ATTGTATACAAT

Gene: Sama_1532: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
*
Shewanella loihica PV-4

Site:
position = -32
score = 4.87792
sequence = ATTGCATACAAA

Site:
position = -118
score = 5.32149
sequence = ATTGTATACAAT

Gene: Shew_2361: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
*
Shewanella pealeana ATCC 700345

Site:
position = -43
score = 5.32149
sequence = ATTGTATACAAT

Site:
position = -124
score = 3.86645
sequence = ATTGTATACGCA

Gene: Spea_1705: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
*
Shewanella halifaxensis HAW-EB4

Site:
position = 95
score = 5.32149
sequence = ATTGTATACAAT

Site:
position = 14
score = 3.86645
sequence = ATTGTATACGCA

Gene: Shal_2554: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
*
Shewanella piezotolerans WP3

Site:
position = -41
score = 5.32149
sequence = ATTGTATACAAT

Site:
position = -112
score = 3.2827
sequence = ATTGTATACGCG

Gene: swp_1985: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
*
Shewanella sediminis HAW-EB3

Site:
position = -32
score = 4.87792
sequence = ATTGCATACAAA

Site:
position = -105
score = 5.32149
sequence = ATTGTATACAAT

Gene: Ssed_1763: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
*
Shewanella woodyi ATCC 51908

Site:
position = -106
score = 5.32149
sequence = ATTGTATACAAT

Site:
position = -32
score = 4.87792
sequence = ATTGCATACAAA

Gene: Swoo_2821: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
hypO
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B

Gene: Sama_1533: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
 
Shewanella loihica PV-4

Gene: Shew_2360: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
 
Shewanella pealeana ATCC 700345

Gene: Spea_1706: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2553: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
 
Shewanella piezotolerans WP3

Gene: swp_1986: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1764: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
 
Shewanella woodyi ATCC 51908

Gene: Swoo_2820: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
 
CRON 7.
colA3
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
*
Shewanella loihica PV-4

Site:
position = -159
score = 4.94466
sequence = ATTGTATAAAAT

Gene: Shew_1685: Microbial collagenase, secreted (EC 3.4.24.3)
*
Shewanella pealeana ATCC 700345

Site:
position = -160
score = 4.48992
sequence = ATTGTATAAATT

Gene: Spea_2754: Microbial collagenase, secreted (EC 3.4.24.3)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -170
score = 4.48992
sequence = ATTGTATAAATT

Gene: Shal_2840: Microbial collagenase, secreted (EC 3.4.24.3)
*
Shewanella piezotolerans WP3

Site:
position = -216
score = 3.39332
sequence = ATTGGAGTCAAT

Site:
position = -359
score = 4.1801
sequence = ATTGCATAAATT

Gene: swp_3353: Microbial collagenase, secreted (EC 3.4.24.3)
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Microbial collagenase, secreted (EC 3.4.24.3)
 
CRON 8.
hypD
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
*
Shewanella amazonensis SB2B

Site:
position = -110
score = 5.32149
sequence = ATTGTATACAAT

Site:
position = -183
score = 4.55693
sequence = AATGTATGCAAT

Gene: Sama_1531: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
*
Shewanella loihica PV-4

Site:
position = -97
score = 5.32149
sequence = ATTGTATACAAT

Site:
position = -183
score = 4.87792
sequence = TTTGTATGCAAT

Gene: Shew_2362: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
*
Shewanella pealeana ATCC 700345

Site:
position = -76
score = 3.86645
sequence = TGCGTATACAAT

Site:
position = -157
score = 5.32149
sequence = ATTGTATACAAT

Gene: Spea_1704: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -65
score = 3.86645
sequence = TGCGTATACAAT

Site:
position = -146
score = 5.32149
sequence = ATTGTATACAAT

Gene: Shal_2555: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
*
Shewanella piezotolerans WP3

Site:
position = -138
score = 5.32149
sequence = ATTGTATACAAT

Gene: swp_1984: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
*
Shewanella sediminis HAW-EB3

Site:
position = -171
score = 4.87792
sequence = TTTGTATGCAAT

Site:
position = -98
score = 5.32149
sequence = ATTGTATACAAT

Gene: Ssed_1762: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
*
Shewanella woodyi ATCC 51908

Site:
position = -95
score = 5.32149
sequence = ATTGTATACAAT

Site:
position = -169
score = 4.87792
sequence = TTTGTATGCAAT

Gene: Swoo_2822: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
hypE
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B

Gene: Sama_1530: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
 
Shewanella loihica PV-4

Gene: Shew_2363: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
 
Shewanella pealeana ATCC 700345

Gene: Spea_1703: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2556: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
 
Shewanella piezotolerans WP3

Gene: swp_1983: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1761: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_2823: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
hypH
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B

Gene: Sama_1529: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
 
Shewanella loihica PV-4

Gene: Shew_2364: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
 
Shewanella pealeana ATCC 700345

Gene: Spea_1702: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2557: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
 
Shewanella piezotolerans WP3

Gene: swp_1982: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1760: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
 
Shewanella woodyi ATCC 51908

Gene: Swoo_2824: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
hypR
 
Shewanella oneidensis MR-1

Gene: SO2852: Predicted regulator for proline and hydroxyproline utilization, GntR family
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2354: Predicted regulator for proline and hydroxyproline utilization, GntR family
 
Shewanella sp W3-18-1

Gene: Sputw3181_1655: Predicted regulator for proline and hydroxyproline utilization, GntR family
 
Shewanella sp ANA-3

Gene: Shewana3_1582: Predicted regulator for proline and hydroxyproline utilization, GntR family
 
Shewanella sp MR-4

Gene: Shewmr4_1521: Predicted regulator for proline and hydroxyproline utilization, GntR family
 
Shewanella sp MR-7

Gene: Shewmr7_1588: Predicted regulator for proline and hydroxyproline utilization, GntR family
 
Shewanella baltica OS155

Gene: Sbal_2633: Predicted regulator for proline and hydroxyproline utilization, GntR family
 
Shewanella denitrificans OS217

Gene: Sden_1382: Predicted regulator for proline and hydroxyproline utilization, GntR family
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1551: Predicted regulator for proline and hydroxyproline utilization, GntR family
*
Shewanella amazonensis SB2B

Site:
position = -19
score = 3.39882
sequence = TTGGTATAAAGA

Gene: Sama_1528: Predicted regulator for proline and hydroxyproline utilization, GntR family
 
Shewanella loihica PV-4

Gene: Shew_2365: Predicted regulator for proline and hydroxyproline utilization, GntR family
*
Shewanella pealeana ATCC 700345

Site:
position = -30
score = 3.63866
sequence = CTTGTATAAATA

Gene: Spea_1701: Predicted regulator for proline and hydroxyproline utilization, GntR family
*
Shewanella halifaxensis HAW-EB4

Site:
position = -29
score = 3.63866
sequence = CTTGTATAAATA

Gene: Shal_2558: Predicted regulator for proline and hydroxyproline utilization, GntR family
 
Shewanella piezotolerans WP3

Gene: swp_1981: Predicted regulator for proline and hydroxyproline utilization, GntR family
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1759: Predicted regulator for proline and hydroxyproline utilization, GntR family
 
Shewanella woodyi ATCC 51908

Gene: Swoo_2825: Predicted regulator for proline and hydroxyproline utilization, GntR family
Predicted regulator for proline and hydroxyproline utilization, GntR family
 
CRON 9.
COG2423
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
*
Shewanella amazonensis SB2B

Site:
position = -42
score = 3.75862
sequence = AGTACATACAAT

Gene: Sama_2610: Predicted ornithine cyclodeaminase, mu-crystallin homolog
*
Shewanella loihica PV-4

Site:
position = -36
score = 4.65294
sequence = TTTGCATACAAT

Gene: Shew_2955: Predicted ornithine cyclodeaminase, mu-crystallin homolog
*
Shewanella pealeana ATCC 700345

Site:
position = -32
score = 4.59854
sequence = ATAGTATAAAAT

Gene: Spea_3170: Predicted ornithine cyclodeaminase, mu-crystallin homolog
*
Shewanella halifaxensis HAW-EB4

Site:
position = -32
score = 4.59854
sequence = ATAGTATAAAAT

Gene: Shal_3252: Predicted ornithine cyclodeaminase, mu-crystallin homolog
 
Shewanella piezotolerans WP3

Gene: swp_3859: Predicted ornithine cyclodeaminase, mu-crystallin homolog
*
Shewanella sediminis HAW-EB3

Site:
position = -31
score = 4.30936
sequence = ACTGTATCCAAA

Gene: Ssed_3503: Predicted ornithine cyclodeaminase, mu-crystallin homolog
*
Shewanella woodyi ATCC 51908

Site:
position = -33
score = 4.49913
sequence = TTGGTATACAAT

Gene: Swoo_3726: Predicted ornithine cyclodeaminase, mu-crystallin homolog
Predicted ornithine cyclodeaminase, mu-crystallin homolog
 
CRON 10.
omp (COG1629)
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
*
Shewanella frigidimarina NCIMB 400

Site:
position = -244
score = 3.99487
sequence = ATTGTTTATAAT

Gene: Sfri_2628: TonB-dependent receptor
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4

Gene: Shew_2480: TonB-dependent receptor
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
*
Shewanella piezotolerans WP3

Site:
position = -85
score = 5.01168
sequence = ATTGCATACAAT

Gene: swp_3281: TonB-dependent receptor
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1569: TonB-dependent receptor
 
Shewanella woodyi ATCC 51908
TonB-dependent receptor
 
CRON 11.
pdtP
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
*
Shewanella loihica PV-4

Site:
position = -26
score = 4.55693
sequence = AATGCATACAAT

Gene: Shew_2104: Predicted proline dipeptide/tripeptide permease, MFS family
*
Shewanella pealeana ATCC 700345

Site:
position = -26
score = 4.48992
sequence = AATGTATAAAAT

Gene: Spea_2388: Predicted proline dipeptide/tripeptide permease, MFS family
*
Shewanella halifaxensis HAW-EB4

Site:
position = -26
score = 4.48992
sequence = AATGTATAAAAT

Gene: Shal_1895: Predicted proline dipeptide/tripeptide permease, MFS family
*
Shewanella piezotolerans WP3

Site:
position = 16
score = 4.48992
sequence = AATGTATAAAAT

Gene: swp_2320: Predicted proline dipeptide/tripeptide permease, MFS family
*
Shewanella sediminis HAW-EB3

Site:
position = -25
score = 4.69346
sequence = AGTGTATACAAT

Gene: Ssed_2005: Predicted proline dipeptide/tripeptide permease, MFS family
*
Shewanella woodyi ATCC 51908

Site:
position = -29
score = 4.48992
sequence = AATGTATAAAAT

Gene: Swoo_2598: Predicted proline dipeptide/tripeptide permease, MFS family
Predicted proline dipeptide/tripeptide permease, MFS family
 
CRON 12.
putA
*
Shewanella oneidensis MR-1

Site:
position = -92
score = 5.36724
sequence = ATTGTATACAAA

Gene: SO3774: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
*
Shewanella putrefaciens CN-32

Site:
position = -74
score = 5.36724
sequence = ATTGTATACAAA

Gene: Sputcn32_3099: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
*
Shewanella sp W3-18-1

Site:
position = -74
score = 5.36724
sequence = ATTGTATACAAA

Gene: Sputw3181_0845: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
*
Shewanella sp ANA-3

Site:
position = -77
score = 5.36724
sequence = ATTGTATACAAA

Gene: Shewana3_0819: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
*
Shewanella sp MR-4

Site:
position = -78
score = 5.36724
sequence = ATTGTATACAAA

Gene: Shewmr4_3122: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
*
Shewanella sp MR-7

Site:
position = -77
score = 5.36724
sequence = ATTGTATACAAA

Gene: Shewmr7_0850: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
*
Shewanella baltica OS155

Site:
position = -74
score = 5.36724
sequence = ATTGTATACAAA

Gene: Sbal_3458: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
*
Shewanella denitrificans OS217

Site:
position = -119
score = 5.36724
sequence = ATTGTATACAAA

Gene: Sden_0689: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
*
Shewanella frigidimarina NCIMB 400

Site:
position = -76
score = 5.36724
sequence = ATTGTATACAAA

Gene: Sfri_0568: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
*
Shewanella amazonensis SB2B

Site:
position = -99
score = 5.36724
sequence = ATTGTATACAAA

Gene: Sama_2676: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
*
Shewanella loihica PV-4

Site:
position = -92
score = 5.36724
sequence = ATTGTATACAAA

Gene: Shew_0615: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
*
Shewanella pealeana ATCC 700345

Site:
position = -73
score = 5.36724
sequence = ATTGTATACAAA

Gene: Spea_3490: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -68
score = 5.36724
sequence = ATTGTATACAAA

Gene: Shal_3585: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
*
Shewanella piezotolerans WP3

Site:
position = -83
score = 5.36724
sequence = ATTGTATACAAA

Gene: swp_0809: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
*
Shewanella sediminis HAW-EB3

Site:
position = -110
score = 5.36724
sequence = ATTGTATACAAA

Site:
position = -247
score = 4.08846
sequence = TGAGTATACAAT

Gene: Ssed_3846: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
*
Shewanella woodyi ATCC 51908

Site:
position = -124
score = 5.36724
sequence = ATTGTATACAAA

Gene: Swoo_0714: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
 
CRON 13.
ampP
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
*
Shewanella amazonensis SB2B

Site:
position = -61
score = 4.56811
sequence = ATTGCATGCAAA

Gene: Sama_1534: Xaa-Pro aminopeptidase (EC 3.4.11.9)
*
Shewanella loihica PV-4

Site:
position = -65
score = 3.87913
sequence = AATGAATAAAAT

Gene: Shew_2358: Xaa-Pro aminopeptidase (EC 3.4.11.9)
*
Shewanella pealeana ATCC 700345

Site:
position = -71
score = 3.87913
sequence = AATGAATAAAAT

Gene: Spea_1711: Xaa-Pro aminopeptidase (EC 3.4.11.9)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -77
score = 3.70861
sequence = AAAGTATACACT

Gene: Shal_2548: Xaa-Pro aminopeptidase (EC 3.4.11.9)
*
Shewanella piezotolerans WP3

Site:
position = -28
score = 4.24173
sequence = AATATATACAAT

Gene: swp_1988: Xaa-Pro aminopeptidase (EC 3.4.11.9)
*
Shewanella sediminis HAW-EB3

Site:
position = -126
score = 4.20289
sequence = AAAGTATACAAA

Gene: Ssed_1782: Xaa-Pro aminopeptidase (EC 3.4.11.9)
*
Shewanella woodyi ATCC 51908

Site:
position = -94
score = 3.57787
sequence = AAAATATACAAA

Gene: Swoo_2816: Xaa-Pro aminopeptidase (EC 3.4.11.9)
Xaa-Pro aminopeptidase (EC 3.4.11.9)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD