Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog TauR - Nocardiaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Taurine utilization
Effector: Taurine
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 10 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Nocardia farcinica IFM 10152
Rhodococcus erythropolis PR4
Rhodococcus opacus B4 8 5
Rhodococcus sp. RHA1 9 5
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
thiG
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4
*
Rhodococcus opacus B4

Site:
position = -92
score = 8.12321
sequence = CTGGACCTAT-(14)-GTGGCTCTGA

Gene: ROP_33900: Thiazole biosynthesis protein ThiG
*
Rhodococcus sp. RHA1

Site:
position = -95
score = 7.99815
sequence = CTGGACCTAT-(14)-GTGGTTCTGA

Gene: RHA1_ro03594: Thiazole biosynthesis protein ThiG
Thiazole biosynthesis protein ThiG
 
CRON 2.
ald
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4
*
Rhodococcus opacus B4

Site:
position = -127
score = 8.87371
sequence = CTGGTCCCCG-(14)-CTGGTCCTTC

Gene: ROP_33410: Alanine dehydrogenase (EC 1.4.1.1)
*
Rhodococcus sp. RHA1

Site:
position = -129
score = 8.87371
sequence = CTGGTCCCCG-(14)-CTGGTCCTTC

Gene: RHA1_ro03547: Alanine dehydrogenase (EC 1.4.1.1)
Alanine dehydrogenase (EC 1.4.1.1)
tauR
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4
 
Rhodococcus opacus B4

Gene: ROP_33420: Taurine utilization regulator, GntR family
 
Rhodococcus sp. RHA1

Gene: RHA1_ro03548: Taurine utilization regulator, GntR family
Taurine utilization regulator, GntR family
 
CRON 3.
gabP
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4
*2
Rhodococcus opacus B4

Site:
position = -205
score = 8.81803
sequence = CTGGACCTCA-(14)-CTGGCACTGT

Gene: ROP_33850: Gamma-aminobutyrate permease

Site:
position = -126
score = 8.52156
sequence = CTGGTTCCTG-(14)-CTGGCTCTGG

Gene: ROP_33570: Gamma-aminobutyrate permease
*2
Rhodococcus sp. RHA1

Site:
position = -63
score = 9.19543
sequence = CTGGACCCAT-(14)-CTGGCTCTGG

Gene: RHA1_ro03588: Gamma-aminobutyrate permease

Site:
position = -207
score = 8.81803
sequence = CTGGTCCTCA-(14)-CTGGCACTGT

Gene: RHA1_ro03589: Gamma-aminobutyrate permease
Gamma-aminobutyrate permease
pdxS2
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4
 
Rhodococcus opacus B4
 2
Rhodococcus sp. RHA1

Gene: RHA1_ro06884: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)

Gene: RHA1_ro03587: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
CRON 4.
tpa
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4
*
Rhodococcus opacus B4

Site:
position = -90
score = 9.07037
sequence = CTGGACCCAT-(14)-CTGGTTCTGA

Gene: ROP_33400: Taurine--pyruvate aminotransferase (EC 2.6.1.77)
*
Rhodococcus sp. RHA1

Site:
position = -96
score = 9.19543
sequence = CTGGACCCAT-(14)-CTGGCCCTGA

Gene: RHA1_ro03546: Taurine--pyruvate aminotransferase (EC 2.6.1.77)
Taurine--pyruvate aminotransferase (EC 2.6.1.77)
pta
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4
 
Rhodococcus opacus B4

Gene: ROP_33390: Phosphate acetyltransferase (EC 2.3.1.8)
 
Rhodococcus sp. RHA1

Gene: RHA1_ro03545: Phosphate acetyltransferase (EC 2.3.1.8)
Phosphate acetyltransferase (EC 2.3.1.8)
tauE
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4
 
Rhodococcus opacus B4

Gene: ROP_33380: Sulfite exporter
 
Rhodococcus sp. RHA1

Gene: RHA1_ro03544: Sulfite exporter
Sulfite exporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD