Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog BirA - Deinococcus-Thermus

Properties
Regulator type: Transcription factor
Regulator family: BirA
Regulation mode: repressor
Biological process: Biotin biosynthesis
Effector: Biotin
Phylum: Deinococcus-Thermus
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 3 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Deinococcus deserti VCD115
Deinococcus geothermalis DSM 11300
Deinococcus radiodurans R1
Thermus aquaticus Y51MC23 1 1
Thermus thermophilus HB27 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
bioB
 
Deinococcus deserti VCD115
 
Deinococcus geothermalis DSM 11300
 
Deinococcus radiodurans R1
 
Thermus aquaticus Y51MC23
*
Thermus thermophilus HB27

Site:
position = -35
score = 9.24497
sequence = TCGTAAACT-(15)-GGTTTACGA

Gene: TTC0242: Biotin synthase (EC 2.8.1.6)
Biotin synthase (EC 2.8.1.6)
 
CRON 2.
bioY
 
Deinococcus deserti VCD115

Gene: Deide_19460: Substrate-specific component BioY of biotin ECF transporter
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_2139: Substrate-specific component BioY of biotin ECF transporter
 
Deinococcus radiodurans R1
*
Thermus aquaticus Y51MC23

Site:
position = -61
score = 9.39662
sequence = CCGTCAACC-(15)-GGTTGACGA

Gene: TaqDRAFT_5371: Substrate-specific component BioY of biotin ECF transporter
*
Thermus thermophilus HB27

Site:
position = -97
score = 9.39662
sequence = ACGTCAACC-(15)-GGTTGACGA

Gene: TTC0548: Substrate-specific component BioY of biotin ECF transporter
Substrate-specific component BioY of biotin ECF transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD