Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog BirA - Chlorobiales

Properties
Regulator type: Transcription factor
Regulator family: BirA
Regulation mode: repressor
Biological process: Biotin biosynthesis
Effector: Biotin
Phylum: Chlorobiales
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 10 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Chlorobaculum parvum NCIB 8327 8 1
Chlorobium chlorochromatii CaD3 7 1
Chlorobium ferrooxidans DSM 13031 8 1
Chlorobium limicola DSM 245 9 1
Chlorobium phaeobacteroides BS1 8 1
Chlorobium phaeobacteroides DSM 266 7 1
Chloroherpeton thalassium ATCC 35110
Pelodictyon luteolum DSM 273 9 1
Pelodictyon phaeoclathratiforme BU-1 8 1
Prosthecochloris aestuarii DSM 271 7 1
Prosthecochloris vibrioformis DSM 265 8 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
birA
*
Chlorobaculum parvum NCIB 8327

Site:
position = -145
score = 9.3649
sequence = TTGTCAAC-(16)-GTTGACAA

Gene: Cpar_2017: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor
*
Chlorobium chlorochromatii CaD3

Site:
position = -45
score = 7.76215
sequence = TTATCAAC-(16)-GTTAATAA

Gene: Cag_0077: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor
*
Chlorobium ferrooxidans DSM 13031

Site:
position = -89
score = 8.4231
sequence = TTGTCAAC-(16)-GTTCACAT

Gene: CferDRAFT_1619: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor
*
Chlorobium limicola DSM 245

Site:
position = -66
score = 8.88591
sequence = TTGTCAAC-(16)-GTTGACAG

Gene: Clim_2431: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor
*
Chlorobium phaeobacteroides BS1

Site:
position = -93
score = 9.3649
sequence = TTGTCAAC-(16)-GTTGACAA

Gene: Cphamn1_2459: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor
*
Chlorobium phaeobacteroides DSM 266

Site:
position = -74
score = 8.90209
sequence = TTGTCAAC-(16)-GTTTACAA

Gene: Cpha266_0111: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor
 
Chloroherpeton thalassium ATCC 35110
*
Pelodictyon luteolum DSM 273

Site:
position = -55
score = 9.3649
sequence = TTGTCAAC-(16)-GTTGACAA

Gene: Plut_2071: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor
*
Pelodictyon phaeoclathratiforme BU-1

Site:
position = -68
score = 7.96029
sequence = TTGTAAAC-(16)-GTTCACAT

Gene: Ppha_2840: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor
*
Prosthecochloris aestuarii DSM 271

Site:
position = -61
score = 8.24095
sequence = TTGTCAAC-(16)-GTTGACGG

Gene: Paes_2191: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor
*
Prosthecochloris vibrioformis DSM 265

Site:
position = -75
score = 9.3649
sequence = TTGTCAAC-(16)-GTTGACAA

Gene: Cvib_1712: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor
Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor
bioB
 
Chlorobaculum parvum NCIB 8327

Gene: Cpar_2016: Biotin synthase (EC 2.8.1.6)
 
Chlorobium chlorochromatii CaD3

Gene: Cag_0078: Biotin synthase (EC 2.8.1.6)
 
Chlorobium ferrooxidans DSM 13031

Gene: CferDRAFT_1618: Biotin synthase (EC 2.8.1.6)
 
Chlorobium limicola DSM 245

Gene: Clim_2430: Biotin synthase (EC 2.8.1.6)
 
Chlorobium phaeobacteroides BS1

Gene: Cphamn1_2458: Biotin synthase (EC 2.8.1.6)
 
Chlorobium phaeobacteroides DSM 266

Gene: Cpha266_0112: Biotin synthase (EC 2.8.1.6)
 
Chloroherpeton thalassium ATCC 35110
 
Pelodictyon luteolum DSM 273

Gene: Plut_2070: Biotin synthase (EC 2.8.1.6)
 
Pelodictyon phaeoclathratiforme BU-1

Gene: Ppha_2839: Biotin synthase (EC 2.8.1.6)
 
Prosthecochloris aestuarii DSM 271

Gene: Paes_2190: Biotin synthase (EC 2.8.1.6)
 
Prosthecochloris vibrioformis DSM 265

Gene: Cvib_1711: Biotin synthase (EC 2.8.1.6)
Biotin synthase (EC 2.8.1.6)
bioF
 
Chlorobaculum parvum NCIB 8327

Gene: Cpar_2015: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Chlorobium chlorochromatii CaD3

Gene: Cag_0079: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Chlorobium ferrooxidans DSM 13031

Gene: CferDRAFT_1617: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Chlorobium limicola DSM 245

Gene: Clim_2429: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Chlorobium phaeobacteroides BS1

Gene: Cphamn1_2457: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Chlorobium phaeobacteroides DSM 266

Gene: Cpha266_0113: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Chloroherpeton thalassium ATCC 35110
 
Pelodictyon luteolum DSM 273

Gene: Plut_2069: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Pelodictyon phaeoclathratiforme BU-1

Gene: Ppha_2838: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Prosthecochloris aestuarii DSM 271

Gene: Paes_2189: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Prosthecochloris vibrioformis DSM 265

Gene: Cvib_1710: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
8-amino-7-oxononanoate synthase (EC 2.3.1.47)
bioG
 
Chlorobaculum parvum NCIB 8327

Gene: Cpar_2014: Biotin synthesis protein bioG
 
Chlorobium chlorochromatii CaD3

Gene: Cag_0080: Biotin synthesis protein bioG
 
Chlorobium ferrooxidans DSM 13031

Gene: CferDRAFT_1616: Biotin synthesis protein bioG
 
Chlorobium limicola DSM 245

Gene: Clim_2428: Biotin synthesis protein bioG
 
Chlorobium phaeobacteroides BS1

Gene: Cphamn1_2456: Biotin synthesis protein bioG
 
Chlorobium phaeobacteroides DSM 266

Gene: Cpha266_0114: Biotin synthesis protein bioG
 
Chloroherpeton thalassium ATCC 35110
 
Pelodictyon luteolum DSM 273

Gene: Plut_2068: Biotin synthesis protein bioG
 
Pelodictyon phaeoclathratiforme BU-1

Gene: Ppha_2837: Biotin synthesis protein bioG
 
Prosthecochloris aestuarii DSM 271

Gene: Paes_2188: Biotin synthesis protein bioG
 
Prosthecochloris vibrioformis DSM 265

Gene: Cvib_1709: Biotin synthesis protein bioG
Biotin synthesis protein bioG
bioC
 
Chlorobaculum parvum NCIB 8327

Gene: Cpar_2013: Biotin synthesis protein bioC
 
Chlorobium chlorochromatii CaD3

Gene: Cag_0081: Biotin synthesis protein bioC
 
Chlorobium ferrooxidans DSM 13031

Gene: CferDRAFT_1615: Biotin synthesis protein bioC
 
Chlorobium limicola DSM 245

Gene: Clim_2427: Biotin synthesis protein bioC
 
Chlorobium phaeobacteroides BS1

Gene: Cphamn1_2455: Biotin synthesis protein bioC
 
Chlorobium phaeobacteroides DSM 266

Gene: Cpha266_0115: Biotin synthesis protein bioC
 
Chloroherpeton thalassium ATCC 35110
 
Pelodictyon luteolum DSM 273

Gene: Plut_2067: Biotin synthesis protein bioC
 
Pelodictyon phaeoclathratiforme BU-1

Gene: Ppha_2836: Biotin synthesis protein bioC
 
Prosthecochloris aestuarii DSM 271

Gene: Paes_2187: Biotin synthesis protein bioC
 
Prosthecochloris vibrioformis DSM 265

Gene: Cvib_1708: Biotin synthesis protein bioC
Biotin synthesis protein bioC
bioD
 
Chlorobaculum parvum NCIB 8327

Gene: Cpar_2012: Dethiobiotin synthetase (EC 6.3.3.3)
 
Chlorobium chlorochromatii CaD3

Gene: Cag_0082: Dethiobiotin synthetase (EC 6.3.3.3)
 
Chlorobium ferrooxidans DSM 13031

Gene: CferDRAFT_1614: Dethiobiotin synthetase (EC 6.3.3.3)
 
Chlorobium limicola DSM 245

Gene: Clim_2426: Dethiobiotin synthetase (EC 6.3.3.3)
 
Chlorobium phaeobacteroides BS1

Gene: Cphamn1_2454: Dethiobiotin synthetase (EC 6.3.3.3)
 
Chlorobium phaeobacteroides DSM 266

Gene: Cpha266_0116: Dethiobiotin synthetase (EC 6.3.3.3)
 
Chloroherpeton thalassium ATCC 35110
 
Pelodictyon luteolum DSM 273

Gene: Plut_2066: Dethiobiotin synthetase (EC 6.3.3.3)
 
Pelodictyon phaeoclathratiforme BU-1

Gene: Ppha_2835: Dethiobiotin synthetase (EC 6.3.3.3)
 
Prosthecochloris aestuarii DSM 271

Gene: Paes_2186: Dethiobiotin synthetase (EC 6.3.3.3)
 
Prosthecochloris vibrioformis DSM 265

Gene: Cvib_1707: Dethiobiotin synthetase (EC 6.3.3.3)
Dethiobiotin synthetase (EC 6.3.3.3)
bioA
 
Chlorobaculum parvum NCIB 8327

Gene: Cpar_2011: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Chlorobium chlorochromatii CaD3

Gene: Cag_0083: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Chlorobium ferrooxidans DSM 13031

Gene: CferDRAFT_1613: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Chlorobium limicola DSM 245

Gene: Clim_2425: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Chlorobium phaeobacteroides BS1

Gene: Cphamn1_2453: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Chlorobium phaeobacteroides DSM 266

Gene: Cpha266_0117: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Chloroherpeton thalassium ATCC 35110
 
Pelodictyon luteolum DSM 273

Gene: Plut_2065: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Pelodictyon phaeoclathratiforme BU-1

Gene: Ppha_2834: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Prosthecochloris aestuarii DSM 271

Gene: Paes_2185: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Prosthecochloris vibrioformis DSM 265

Gene: Cvib_1706: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
lcfA
 
Chlorobaculum parvum NCIB 8327

Gene: Cpar_2010: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
 
Chlorobium chlorochromatii CaD3
 
Chlorobium ferrooxidans DSM 13031

Gene: CferDRAFT_1612: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
 
Chlorobium limicola DSM 245

Gene: Clim_2424: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
 
Chlorobium phaeobacteroides BS1
 
Chlorobium phaeobacteroides DSM 266
 
Chloroherpeton thalassium ATCC 35110
 
Pelodictyon luteolum DSM 273

Gene: Plut_2064: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
 
Pelodictyon phaeoclathratiforme BU-1

Gene: Ppha_2833: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
 
Prosthecochloris aestuarii DSM 271
 
Prosthecochloris vibrioformis DSM 265
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
SSF53335
 
Chlorobaculum parvum NCIB 8327
 
Chlorobium chlorochromatii CaD3
 
Chlorobium ferrooxidans DSM 13031
 
Chlorobium limicola DSM 245

Gene: Clim_2423: hypothetical S-adenosyl-L-methionine-dependent methyltransferas
 
Chlorobium phaeobacteroides BS1

Gene: Cphamn1_2452: hypothetical S-adenosyl-L-methionine-dependent methyltransferas
 
Chlorobium phaeobacteroides DSM 266
 
Chloroherpeton thalassium ATCC 35110
 
Pelodictyon luteolum DSM 273

Gene: Plut_2063: hypothetical S-adenosyl-L-methionine-dependent methyltransferas
 
Pelodictyon phaeoclathratiforme BU-1
 
Prosthecochloris aestuarii DSM 271
 
Prosthecochloris vibrioformis DSM 265

Gene: Cvib_1705: hypothetical S-adenosyl-L-methionine-dependent methyltransferas
hypothetical S-adenosyl-L-methionine-dependent methyltransferas
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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