Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog BirA - Thermoanaerobacterales

Properties
Regulator type: Transcription factor
Regulator family: BirA
Regulation mode: repressor
Biological process: Biotin biosynthesis
Effector: Biotin
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 11 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Anaerocellum thermophilum DSM 6725 5 3
Caldicellulosiruptor saccharolyticus DSM 8903 5 3
Carboxydothermus hydrogenoformans Z-2901 2 2
Moorella thermoacetica ATCC 39073
Thermoanaerobacter ethanolicus X514 1 1
Thermoanaerobacter italicus Ab9 1 1
Thermoanaerobacter tengcongensis MB4 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
bioY3
*
Anaerocellum thermophilum DSM 6725

Site:
position = -103
score = 8.46559
sequence = TAGTAAAC-(16)-GTTGACAA

Gene: Athe_2544: Substrate-specific component BioY of biotin ECF transporter
*
Caldicellulosiruptor saccharolyticus DSM 8903

Site:
position = -73
score = 7.60273
sequence = TAGTAAAC-(16)-GTTGACAT

Gene: Csac_0304: Substrate-specific component BioY of biotin ECF transporter
 
Carboxydothermus hydrogenoformans Z-2901
 
Moorella thermoacetica ATCC 39073
 
Thermoanaerobacter ethanolicus X514
 
Thermoanaerobacter italicus Ab9
 
Thermoanaerobacter tengcongensis MB4
Substrate-specific component BioY of biotin ECF transporter
bioD
 
Anaerocellum thermophilum DSM 6725

Gene: Athe_2543: Dethiobiotin synthetase (EC 6.3.3.3)
 
Caldicellulosiruptor saccharolyticus DSM 8903

Gene: Csac_0305: Dethiobiotin synthetase (EC 6.3.3.3)
 
Carboxydothermus hydrogenoformans Z-2901
 
Moorella thermoacetica ATCC 39073
 
Thermoanaerobacter ethanolicus X514
 
Thermoanaerobacter italicus Ab9
 
Thermoanaerobacter tengcongensis MB4
Dethiobiotin synthetase (EC 6.3.3.3)
bioA
 
Anaerocellum thermophilum DSM 6725

Gene: Athe_2542: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Caldicellulosiruptor saccharolyticus DSM 8903

Gene: Csac_0306: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Carboxydothermus hydrogenoformans Z-2901
 
Moorella thermoacetica ATCC 39073
 
Thermoanaerobacter ethanolicus X514
 
Thermoanaerobacter italicus Ab9
 
Thermoanaerobacter tengcongensis MB4
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
CRON 2.
bioB
*
Anaerocellum thermophilum DSM 6725

Site:
position = -88
score = 7.619
sequence = ATGTAAAC-(16)-GTTTACTA

Gene: Athe_2541: Biotin synthase (EC 2.8.1.6)
*
Caldicellulosiruptor saccharolyticus DSM 8903

Site:
position = -102
score = 6.34227
sequence = CAGTAAAT-(16)-GTTTACTA

Gene: Csac_0307: Biotin synthase (EC 2.8.1.6)
*
Carboxydothermus hydrogenoformans Z-2901

Site:
position = -83
score = 8.95224
sequence = TTGTTAAC-(15)-GTTGACAA

Gene: CHY_0889: Biotin synthase (EC 2.8.1.6)
 
Moorella thermoacetica ATCC 39073
 
Thermoanaerobacter ethanolicus X514
 
Thermoanaerobacter italicus Ab9
 
Thermoanaerobacter tengcongensis MB4
Biotin synthase (EC 2.8.1.6)
 
CRON 3.
bioY2
*
Anaerocellum thermophilum DSM 6725

Site:
position = -47
score = 7.619
sequence = TAGTAAAC-(15)-GTTTACAT

Gene: Athe_2725: Substrate-specific component BioY of biotin ECF transporter
*
Caldicellulosiruptor saccharolyticus DSM 8903

Site:
position = -48
score = 7.03665
sequence = TAGTAAAC-(16)-GTTTACTT

Gene: Csac_0198: Substrate-specific component BioY of biotin ECF transporter
*
Carboxydothermus hydrogenoformans Z-2901

Site:
position = -15
score = 7.23314
sequence = AGGTTAAC-(15)-GTTGACAA

Gene: CHY_1642: Substrate-specific component BioY of biotin ECF transporter
 
Moorella thermoacetica ATCC 39073
 
Thermoanaerobacter ethanolicus X514
 
Thermoanaerobacter italicus Ab9
 
Thermoanaerobacter tengcongensis MB4
Substrate-specific component BioY of biotin ECF transporter
 
CRON 4.
bioY1
 
Anaerocellum thermophilum DSM 6725
 
Caldicellulosiruptor saccharolyticus DSM 8903
 
Carboxydothermus hydrogenoformans Z-2901
 
Moorella thermoacetica ATCC 39073

Gene: Moth_0144: Substrate-specific component BioY of biotin ECF transporter
*
Thermoanaerobacter ethanolicus X514

Site:
position = -86
score = 8.95224
sequence = TTGTTAAC-(15)-GTTGACAA

Gene: Teth514_2213: Substrate-specific component BioY of biotin ECF transporter
*
Thermoanaerobacter italicus Ab9

Site:
position = -86
score = 8.95224
sequence = TTGTTAAC-(15)-GTTGACAA

Gene: Thit_0733: Substrate-specific component BioY of biotin ECF transporter
*
Thermoanaerobacter tengcongensis MB4

Site:
position = -88
score = 8.36989
sequence = TAGTTAAC-(15)-GTTGACAA

Gene: TTE0777: Substrate-specific component BioY of biotin ECF transporter
Substrate-specific component BioY of biotin ECF transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD