Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog BirA - Clostridia-2

Properties
Regulator type: Transcription factor
Regulator family: BirA
Regulation mode: repressor
Biological process: Biotin biosynthesis
Effector: Biotin
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium bartlettii DSM 16795 1 1
Clostridium difficile 630 4 2
Clostridium hiranonis DSM 13275 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
bioB
 
Clostridium bartlettii DSM 16795
*
Clostridium difficile 630

Site:
position = -108
score = 7.81744
sequence = TAGTAAAC-(16)-GTTGACCA

Site:
position = -44
score = 8.16004
sequence = AAGTAAAC-(16)-GTTGACAA

Gene: CD0297: Biotin synthase (EC 2.8.1.6)
 
Clostridium hiranonis DSM 13275
Biotin synthase (EC 2.8.1.6)
 
CRON 2.
bioY2
*
Clostridium bartlettii DSM 16795

Site:
position = -104
score = 7.76754
sequence = ATGTTAAC-(16)-GTTAACGT

Gene: CLOBAR_00985: Substrate-specific component BioY of biotin ECF transporter
 
Clostridium difficile 630
*
Clostridium hiranonis DSM 13275

Site:
position = -152
score = 8.26883
sequence = AGGTAAAC-(16)-GTTGACAT

Gene: CLOHIR_02034: Substrate-specific component BioY of biotin ECF transporter
Substrate-specific component BioY of biotin ECF transporter
 
CRON 3.
bioY
 
Clostridium bartlettii DSM 16795
*
Clostridium difficile 630

Site:
position = -132
score = 8.18508
sequence = ATGTAAAC-(16)-GTTGACAA

Gene: CD2971: Substrate-specific component BioY of biotin ECF transporter
 
Clostridium hiranonis DSM 13275
Substrate-specific component BioY of biotin ECF transporter
yhfS
 
Clostridium bartlettii DSM 16795
 
Clostridium difficile 630

Gene: CD2970: Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Clostridium hiranonis DSM 13275
Acetyl-CoA acetyltransferase (EC 2.3.1.9)
yhfT
 
Clostridium bartlettii DSM 16795
 
Clostridium difficile 630

Gene: CD2969: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
 
Clostridium hiranonis DSM 13275
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD