Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog BirA - Clostridia-1

Properties
Regulator type: Transcription factor
Regulator family: BirA
Regulation mode: repressor
Biological process: Biotin biosynthesis
Effector: Biotin
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 19 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium acetobutylicum ATCC 824 8 4
Clostridium beijerincki NCIMB 8052 3 2
Clostridium botulinum A str. ATCC 3502 3 1
Clostridium butyricum 5521 5 3
Clostridium kluyveri DSM 555 6 3
Clostridium novyi NT 6 2
Clostridium perfringens ATCC 13124
Clostridium tetani E88 4 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
bioY1
*2
Clostridium acetobutylicum ATCC 824

Site:
position = -51
score = 9.0642
sequence = TTGTAAAC-(16)-GTTTACAA

Gene: CAC0211: Substrate-specific component BioY of biotin ECF transporter

Site:
position = -68
score = 8.8728
sequence = TTGTTAAC-(16)-GTTAACAA

Gene: CAC1360: Substrate-specific component BioY of biotin ECF transporter
 
Clostridium beijerincki NCIMB 8052
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -93
score = 9.03168
sequence = TTGTCAAC-(15)-GTTGACAA

Gene: CBO2260: Substrate-specific component BioY of biotin ECF transporter
*
Clostridium butyricum 5521

Site:
position = -73
score = 8.95224
sequence = TTGTTAAC-(15)-GTTGACAA

Gene: CBY_3768: Substrate-specific component BioY of biotin ECF transporter
*
Clostridium kluyveri DSM 555

Site:
position = -93
score = 8.46559
sequence = TTGTAAAC-(16)-GTTGACTA

Gene: CKL_0936: Substrate-specific component BioY of biotin ECF transporter
*
Clostridium novyi NT

Site:
position = -48
score = 9.0642
sequence = TTGTAAAC-(16)-GTTTACAA

Gene: NT01CX_1467: Substrate-specific component BioY of biotin ECF transporter
 
Clostridium perfringens ATCC 13124
*
Clostridium tetani E88

Site:
position = -325
score = 9.04794
sequence = TTGTAAAC-(16)-GTTGACAA

Gene: CTC01861: Substrate-specific component BioY of biotin ECF transporter
Substrate-specific component BioY of biotin ECF transporter
bioD
 
Clostridium acetobutylicum ATCC 824

Gene: CAC1361: Dethiobiotin synthetase (EC 6.3.3.3)
 
Clostridium beijerincki NCIMB 8052
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2258: Dethiobiotin synthetase (EC 6.3.3.3)
 
Clostridium butyricum 5521

Gene: CBY_3767: Dethiobiotin synthetase (EC 6.3.3.3)
 
Clostridium kluyveri DSM 555

Gene: CKL_0937: Dethiobiotin synthetase (EC 6.3.3.3)
 
Clostridium novyi NT

Gene: NT01CX_1468: Dethiobiotin synthetase (EC 6.3.3.3)
 
Clostridium perfringens ATCC 13124

Gene: CPF_1794: Dethiobiotin synthetase (EC 6.3.3.3)
 
Clostridium tetani E88

Gene: CTC01860: Dethiobiotin synthetase (EC 6.3.3.3)
Dethiobiotin synthetase (EC 6.3.3.3)
bioA
 
Clostridium acetobutylicum ATCC 824

Gene: CAC1362: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Clostridium beijerincki NCIMB 8052
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium butyricum 5521

Gene: CBY_3766: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Clostridium kluyveri DSM 555

Gene: CKL_0938: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Clostridium novyi NT

Gene: NT01CX_1469: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
bioB
 
Clostridium acetobutylicum ATCC 824

Gene: CAC0210: Biotin synthase (EC 2.8.1.6)
*
Clostridium beijerincki NCIMB 8052

Site:
position = -96
score = 8.95224
sequence = TTGTTAAC-(16)-GTTGACAA

Gene: Cbei_1914: Biotin synthase (EC 2.8.1.6)
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2259: Biotin synthase (EC 2.8.1.6)
 
Clostridium butyricum 5521
*
Clostridium kluyveri DSM 555

Site:
position = -87
score = 9.0642
sequence = TTGTAAAC-(15)-GTTTACAA

Gene: CKL_1696: Biotin synthase (EC 2.8.1.6)
 
Clostridium novyi NT

Gene: NT01CX_1470: Biotin synthase (EC 2.8.1.6)
 
Clostridium perfringens ATCC 13124

Gene: CPF_1795: Biotin synthase (EC 2.8.1.6)
*
Clostridium tetani E88

Site:
position = -84
score = 8.28056
sequence = CTGTTAAC-(16)-GTTTACAA

Gene: CTC00151: Biotin synthase (EC 2.8.1.6)
Biotin synthase (EC 2.8.1.6)
bioY2
*
Clostridium acetobutylicum ATCC 824

Site:
position = -46
score = 9.0642
sequence = TTGTAAAC-(16)-GTTTACAA

Gene: CAC3456: Substrate-specific component BioY of biotin ECF transporter
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1913: Substrate-specific component BioY of biotin ECF transporter
 
Clostridium botulinum A str. ATCC 3502
*
Clostridium butyricum 5521

Site:
position = -106
score = 8.95224
sequence = TTGTTAAC-(15)-GTTGACAA

Gene: CBY_1671: Substrate-specific component BioY of biotin ECF transporter
*
Clostridium kluyveri DSM 555

Site:
position = -108
score = 9.04794
sequence = TTGTAAAC-(15)-GTTGACAA

Gene: CKL_2248: Substrate-specific component BioY of biotin ECF transporter
*
Clostridium novyi NT

Site:
position = -105
score = 8.95224
sequence = TTGTTAAC-(16)-GTTGACAA

Site:
position = -47
score = 9.0642
sequence = TTGTAAAC-(16)-GTTTACAA

Gene: NT01CX_0019: Substrate-specific component BioY of biotin ECF transporter
 
Clostridium perfringens ATCC 13124
*
Clostridium tetani E88

Site:
position = -53
score = 8.26429
sequence = TTGTCATC-(16)-GTTAACAA

Gene: CTC02091: Substrate-specific component BioY of biotin ECF transporter
Substrate-specific component BioY of biotin ECF transporter
CAC3455
 
Clostridium acetobutylicum ATCC 824

Gene: CAC3455: Iron-sulfur binding protein, hypothetical
*
Clostridium beijerincki NCIMB 8052

Site:
position = -84
score = 8.44933
sequence = TAGTCAAC-(16)-GTTGACAA

Gene: Cbei_1756: Iron-sulfur binding protein, hypothetical
 
Clostridium botulinum A str. ATCC 3502
*
Clostridium butyricum 5521

Site:
position = -142
score = 8.26429
sequence = TTGTTTAC-(15)-GTTGACAA

Gene: CBY_0442: Iron-sulfur binding protein, hypothetical
 
Clostridium kluyveri DSM 555

Gene: CKL_2249: Iron-sulfur binding protein, hypothetical
 
Clostridium novyi NT

Gene: NT01CX_0018: Iron-sulfur binding protein, hypothetical
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88
Iron-sulfur binding protein, hypothetical
 
CRON 2.
birA
*2
Clostridium acetobutylicum ATCC 824

Site:
position = -147
score = 9.0642
sequence = TTGTAAAC-(16)-GTTTACAA

Gene: CAC0212: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor

Gene: CAC0589: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1015: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO1117: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor
 
Clostridium butyricum 5521

Gene: CBY_2753: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor
 
Clostridium kluyveri DSM 555

Gene: CKL_2417: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor
 
Clostridium novyi NT

Gene: NT01CX_0898: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88

Gene: CTC00852: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor
Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD