Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NrdR - Listeriaceae

Properties
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 17 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Listeria innocua Clip11262 6 2
Listeria monocytogenes EGD-e 6 2
Listeria seeligeri serovar 1/2b str. SLCC3954 6 2
Listeria welshimeri serovar 6b str. SLCC5334 6 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nrdD
*
Listeria innocua Clip11262

Site:
position = -61
score = 4.45167
sequence = AAACTTTATCTTGTGT

Site:
position = -29
score = 5.41988
sequence = ACACAATATATAGTTA

Gene: lin0305: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Listeria monocytogenes EGD-e

Site:
position = -29
score = 5.41988
sequence = ACACAATATATAGTTA

Site:
position = -61
score = 3.96353
sequence = AAACTTCATCTTGTGT

Gene: lmo0279: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Listeria seeligeri serovar 1/2b str. SLCC3954

Site:
position = -29
score = 5.41988
sequence = ACACAATATATAGTTA

Site:
position = -61
score = 3.99425
sequence = AAACTTTATCTTGTGG

Gene: lse_0262: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Listeria welshimeri serovar 6b str. SLCC5334

Site:
position = -61
score = 4.60391
sequence = AAACTTCATATTGTGT

Site:
position = -29
score = 5.41988
sequence = ACACAATATATAGTTA

Gene: lwe0253: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
nrdG
 
Listeria innocua Clip11262

Gene: lin0306: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Listeria monocytogenes EGD-e

Gene: lmo0280: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Listeria seeligeri serovar 1/2b str. SLCC3954

Gene: lse_0263: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Listeria welshimeri serovar 6b str. SLCC5334

Gene: lwe0254: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
CRON 2.
nrdA
*
Listeria innocua Clip11262

Site:
position = -176
score = 5.96353
sequence = ATACTATATATAGTAT

Site:
position = -338
score = 4.30862
sequence = ACACTATAAGTAGTGG

Gene: lin2259: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Listeria monocytogenes EGD-e

Site:
position = -174
score = 5.96353
sequence = ATACTATATATAGTAT

Site:
position = -366
score = 4.30438
sequence = CTACTAAATATAGAAA

Gene: lmo2155: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Listeria seeligeri serovar 1/2b str. SLCC3954

Site:
position = -173
score = 5.96353
sequence = ATACTATATATAGTAT

Site:
position = -366
score = 4.62385
sequence = CTACTAAATATAGAAT

Gene: lse_2142: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Listeria welshimeri serovar 6b str. SLCC5334

Site:
position = -367
score = 4.68632
sequence = CTACTAAATATAGTTT

Site:
position = -336
score = 4.30862
sequence = ACACTATAAGTAGTGG

Site:
position = -174
score = 5.96353
sequence = ATACTATATATAGTAT

Gene: lwe2172: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
nrdB
 
Listeria innocua Clip11262

Gene: lin2258: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Listeria monocytogenes EGD-e

Gene: lmo2154: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Listeria seeligeri serovar 1/2b str. SLCC3954

Gene: lse_2141: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Listeria welshimeri serovar 6b str. SLCC5334

Gene: lwe2171: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
lin2257
 
Listeria innocua Clip11262

Gene: lin2257: flavodoxin
 
Listeria monocytogenes EGD-e

Gene: lmo2153: flavodoxin
 
Listeria seeligeri serovar 1/2b str. SLCC3954

Gene: lse_2140: flavodoxin
 
Listeria welshimeri serovar 6b str. SLCC5334

Gene: lwe2170: flavodoxin
flavodoxin
lin2256
 
Listeria innocua Clip11262

Gene: lin2256: thioredoxin
 
Listeria monocytogenes EGD-e

Gene: lmo2152: thioredoxin
 
Listeria seeligeri serovar 1/2b str. SLCC3954

Gene: lse_2139: thioredoxin
 
Listeria welshimeri serovar 6b str. SLCC5334

Gene: lwe2169: thioredoxin
thioredoxin
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD