Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NrdR - Frankineae/Propionibacterineae/Pseudonocardiaceae

Properties
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 17 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidothermus cellulolyticus 11B 2 1
Frankia sp. CcI3 2 1
Frankia sp. EAN1pec 2 1
Nakamurella multipartita DSM 44233 2 1
Nocardioides sp. JS614 2 1
Propionibacterium acnes KPA171202 6 3
Actinosynnema mirum DSM 43827 4 2
Saccharomonospora viridis DSM 43017 4 2
Saccharopolyspora erythraea NRRL 2338 4 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nrdA
 
Acidothermus cellulolyticus 11B
 
Frankia sp. CcI3
 
Frankia sp. EAN1pec
 
Nakamurella multipartita DSM 44233
 
Nocardioides sp. JS614
*
Propionibacterium acnes KPA171202

Site:
position = -321
score = 4.15452
sequence = GCCCTTCATATAGTGA

Gene: PPA2121: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Actinosynnema mirum DSM 43827

Site:
position = -373
score = 5.3048
sequence = CCACAACATGTAGTGT

Gene: Amir_3157: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Saccharomonospora viridis DSM 43017

Site:
position = -149
score = 3.89164
sequence = CGCCCATATCTTGGGT

Site:
position = -117
score = 4.23629
sequence = CCACTACATGTAGACT

Gene: Svir_16410: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Saccharopolyspora erythraea NRRL 2338

Site:
position = -438
score = 4.96349
sequence = ACCCAAGATGTAGTGT

Gene: SACE_1283: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
nrdB
 
Acidothermus cellulolyticus 11B
 
Frankia sp. CcI3
 
Frankia sp. EAN1pec
 
Nakamurella multipartita DSM 44233
 
Nocardioides sp. JS614
 
Propionibacterium acnes KPA171202

Gene: PPA2122: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Actinosynnema mirum DSM 43827

Gene: Amir_3158: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Saccharomonospora viridis DSM 43017

Gene: Svir_16400: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_1282: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
CRON 2.
nrdR
*
Acidothermus cellulolyticus 11B

Site:
position = -122
score = 4.94487
sequence = CCCCAACATGTAGTAG

Gene: Acel_1477: Ribonucleotide reductase transcriptional regulator NrdR
*
Frankia sp. CcI3

Site:
position = -182
score = 4.87448
sequence = ACACAACATCTGGTGC

Gene: Francci3_3508: Ribonucleotide reductase transcriptional regulator NrdR
*
Frankia sp. EAN1pec

Site:
position = -171
score = 4.7747
sequence = ACACAACATCTTGTAG

Gene: Franean1_1234: Ribonucleotide reductase transcriptional regulator NrdR
*
Nakamurella multipartita DSM 44233

Site:
position = -223
score = 4.85251
sequence = CCCCTACATCTAGTAC

Gene: Namu_3977: Ribonucleotide reductase transcriptional regulator NrdR
*
Nocardioides sp. JS614

Site:
position = -201
score = 5.01293
sequence = CCACTACATCTAGTAC

Gene: Noca_3812: Ribonucleotide reductase transcriptional regulator NrdR
*
Propionibacterium acnes KPA171202

Site:
position = -128
score = 4.73615
sequence = ATACCAGATGTTGTGG

Site:
position = -97
score = 3.99216
sequence = TCCCTATAAGTTGTGT

Gene: PPA1025: Ribonucleotide reductase transcriptional regulator NrdR
*
Actinosynnema mirum DSM 43827

Site:
position = -105
score = 5.22436
sequence = CCCCCACATCTAGTGG

Gene: Amir_1432: Ribonucleotide reductase transcriptional regulator NrdR
*
Saccharomonospora viridis DSM 43017

Site:
position = -224
score = 5.03556
sequence = CCACCACATCTAGTAG

Gene: Svir_27580: Ribonucleotide reductase transcriptional regulator NrdR
*
Saccharopolyspora erythraea NRRL 2338

Site:
position = -139
score = 5.07411
sequence = CCACAACATCTAGTAG

Gene: SACE_1763: Ribonucleotide reductase transcriptional regulator NrdR
Ribonucleotide reductase transcriptional regulator NrdR
nrdJ
 
Acidothermus cellulolyticus 11B

Gene: Acel_1476: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing
 
Frankia sp. CcI3

Gene: Francci3_3507: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing
 
Frankia sp. EAN1pec

Gene: Franean1_1235: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing
 
Nakamurella multipartita DSM 44233

Gene: Namu_3976: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing
 
Nocardioides sp. JS614

Gene: Noca_3811: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing
 
Propionibacterium acnes KPA171202

Gene: PPA1026: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing
 
Actinosynnema mirum DSM 43827

Gene: Amir_1431: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing
 
Saccharomonospora viridis DSM 43017

Gene: Svir_27570: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_1764: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing
 
CRON 3.
nrdD
 
Acidothermus cellulolyticus 11B
 
Frankia sp. CcI3
 
Frankia sp. EAN1pec
 
Nakamurella multipartita DSM 44233
 
Nocardioides sp. JS614
*
Propionibacterium acnes KPA171202

Site:
position = -285
score = 5.01347
sequence = GCACCAGATGTAGGGG

Site:
position = -317
score = 4.22382
sequence = ACCCTTTATCTTGTGC

Gene: PPA2137: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
 
Actinosynnema mirum DSM 43827
 
Saccharomonospora viridis DSM 43017
 
Saccharopolyspora erythraea NRRL 2338
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
nrdG
 
Acidothermus cellulolyticus 11B
 
Frankia sp. CcI3
 
Frankia sp. EAN1pec
 
Nakamurella multipartita DSM 44233
 
Nocardioides sp. JS614
 
Propionibacterium acnes KPA171202

Gene: PPA2136: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Actinosynnema mirum DSM 43827
 
Saccharomonospora viridis DSM 43017
 
Saccharopolyspora erythraea NRRL 2338
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD