Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxR2 - Ralstonia

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector: Pyridoxal-5-phosphate
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Cupriavidus taiwanensis
Ralstonia eutropha H16
Ralstonia eutropha JMP134
Ralstonia metallidurans CH34 4 2
Ralstonia pickettii 12J
Ralstonia solanacearum GMI1000
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG0325
 
Cupriavidus taiwanensis
 
Ralstonia eutropha H16
 
Ralstonia eutropha JMP134
*
Ralstonia metallidurans CH34

Site:
position = -79
score = 5.81406
sequence = TTTGTCCTATGACAAT

Gene: Rmet_4113: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
Predicted pyridoxal phosphate-dependent enzyme, YBL036C type
pdxK
 
Cupriavidus taiwanensis
 
Ralstonia eutropha H16
 
Ralstonia eutropha JMP134
 
Ralstonia metallidurans CH34

Gene: Rmet_4114: Pyridoxal kinase (EC 2.7.1.35)
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
Pyridoxal kinase (EC 2.7.1.35)
pdxZ
 
Cupriavidus taiwanensis
 
Ralstonia eutropha H16
 
Ralstonia eutropha JMP134
 
Ralstonia metallidurans CH34

Gene: Rmet_4115: Short hypothetical protein in pyridoxine metabolism
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
Short hypothetical protein in pyridoxine metabolism
 
CRON 2.
pdxR2
 
Cupriavidus taiwanensis
 
Ralstonia eutropha H16
 
Ralstonia eutropha JMP134
*
Ralstonia metallidurans CH34

Site:
position = -139
score = 5.01393
sequence = TTTGCCCTATGCCAAT

Gene: Rmet_4117: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD