Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PhnR2 - Burkholderia

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: 2-aminoethylphosphonate utilization
Effector: 2-aminoethylphosphonate
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 10 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Burkholderia cepacia AMMD 5 3
Burkholderia glumae BGR1
Burkholderia mallei ATCC 23344
Burkholderia phymatum STM815 9 2
Burkholderia pseudomallei K96243
Burkholderia sp. 383 8 3
Burkholderia vietnamiensis G4
Burkholderia xenovorans LB400 9 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
phnS2
 
Burkholderia cepacia AMMD

Gene: Bamb_4661: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)
 
Burkholderia glumae BGR1

Gene: bglu_2g03900: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)
 
Burkholderia mallei ATCC 23344

Gene: BMAA0855: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)
*
Burkholderia phymatum STM815

Site:
position = -125
score = 4.35965
sequence = GTTGTCGGCAAT

Gene: Bphy_5065: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)
 
Burkholderia pseudomallei K96243

Gene: BPSS0344: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)
 
Burkholderia sp. 383

Gene: Bcep18194_B0348: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_3548: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)
*
Burkholderia xenovorans LB400

Site:
position = -145
score = 4.35965
sequence = GTTGTTGGCAAT

Gene: Bxe_B1875: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)
2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)
phnT2
 
Burkholderia cepacia AMMD

Gene: Bamb_4660: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)
 
Burkholderia glumae BGR1

Gene: bglu_2g03910: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)
 
Burkholderia mallei ATCC 23344

Gene: BMAA0856: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)
 
Burkholderia phymatum STM815

Gene: Bphy_5066: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)
 
Burkholderia pseudomallei K96243

Gene: BPSS0345: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)
 
Burkholderia sp. 383

Gene: Bcep18194_B0349: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_3547: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)
 
Burkholderia xenovorans LB400

Gene: Bxe_B1874: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)
2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)
phnU2
 
Burkholderia cepacia AMMD

Gene: Bamb_4659: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)
 
Burkholderia glumae BGR1

Gene: bglu_2g03920: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)
 
Burkholderia mallei ATCC 23344

Gene: BMAA0857: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)
 
Burkholderia phymatum STM815

Gene: Bphy_5067: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)
 
Burkholderia pseudomallei K96243

Gene: BPSS0346: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)
 
Burkholderia sp. 383

Gene: Bcep18194_B0350: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_3546: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)
 
Burkholderia xenovorans LB400

Gene: Bxe_B1873: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)
2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)
phnV
 
Burkholderia cepacia AMMD

Gene: Bamb_4658: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)
 
Burkholderia glumae BGR1

Gene: bglu_2g03930: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)
 
Burkholderia mallei ATCC 23344

Gene: BMAA0858: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)
 
Burkholderia phymatum STM815

Gene: Bphy_5068: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)
 
Burkholderia pseudomallei K96243

Gene: BPSS0347: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)
 
Burkholderia sp. 383

Gene: Bcep18194_B0351: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_3545: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)
 
Burkholderia xenovorans LB400

Gene: Bxe_B1872: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)
2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)
phnR2
*
Burkholderia cepacia AMMD

Site:
position = -93
score = 4.98385
sequence = ACTGTTGACAAT

Gene: Bamb_3197: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815

Gene: Bphy_5069: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family
 
Burkholderia pseudomallei K96243
*
Burkholderia sp. 383

Site:
position = -93
score = 4.98385
sequence = ACTGTTGACAAT

Gene: Bcep18194_A6499: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400

Gene: Bxe_B1871: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family
2-aminoethylphosphonate uptake and metabolism regulator, GntR family
phnA2
 
Burkholderia cepacia AMMD

Gene: Bamb_4657: Phosphonoacetate hydrolase (EC 3.11.1.2)
 
Burkholderia glumae BGR1

Gene: bglu_2g03940: Phosphonoacetate hydrolase (EC 3.11.1.2)
 
Burkholderia mallei ATCC 23344

Gene: BMAA0859: Phosphonoacetate hydrolase (EC 3.11.1.2)
 
Burkholderia phymatum STM815

Gene: Bphy_5070: Phosphonoacetate hydrolase (EC 3.11.1.2)
 
Burkholderia pseudomallei K96243

Gene: BPSS0348: Phosphonoacetate hydrolase (EC 3.11.1.2)
 
Burkholderia sp. 383

Gene: Bcep18194_B0352: Phosphonoacetate hydrolase (EC 3.11.1.2)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_3544: Phosphonoacetate hydrolase (EC 3.11.1.2)
 
Burkholderia xenovorans LB400

Gene: Bxe_B1870: Phosphonoacetate hydrolase (EC 3.11.1.2)
Phosphonoacetate hydrolase (EC 3.11.1.2)
gap
 
Burkholderia cepacia AMMD

Gene: Bamb_4656: putative NADP-dependentglyceraldehyde-3- phosphate dehydrogenase
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344

Gene: BMAA0860: putative NADP-dependentglyceraldehyde-3- phosphate dehydrogenase
 
Burkholderia phymatum STM815

Gene: Bphy_5071: putative NADP-dependentglyceraldehyde-3- phosphate dehydrogenase
 
Burkholderia pseudomallei K96243

Gene: BPSS0349: putative NADP-dependentglyceraldehyde-3- phosphate dehydrogenase
 
Burkholderia sp. 383

Gene: Bcep18194_B0353: putative NADP-dependentglyceraldehyde-3- phosphate dehydrogenase
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_3543: putative NADP-dependentglyceraldehyde-3- phosphate dehydrogenase
 
Burkholderia xenovorans LB400

Gene: Bxe_B1869: putative NADP-dependentglyceraldehyde-3- phosphate dehydrogenase
putative NADP-dependentglyceraldehyde-3- phosphate dehydrogenase
COG4341
 
Burkholderia cepacia AMMD

Gene: Bamb_4655: HD phosphohydrolase-like protein
 
Burkholderia glumae BGR1

Gene: bglu_2g03950: HD phosphohydrolase-like protein
 
Burkholderia mallei ATCC 23344

Gene: BMAA0861: HD phosphohydrolase-like protein
 
Burkholderia phymatum STM815

Gene: Bphy_5072: HD phosphohydrolase-like protein
 
Burkholderia pseudomallei K96243

Gene: BPSS0350: HD phosphohydrolase-like protein
 
Burkholderia sp. 383

Gene: Bcep18194_B0354: HD phosphohydrolase-like protein
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_3542: HD phosphohydrolase-like protein
 
Burkholderia xenovorans LB400

Gene: Bxe_B1868: HD phosphohydrolase-like protein
HD phosphohydrolase-like protein
 
CRON 2.
Bcep18194_A6494
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815
 
Burkholderia pseudomallei K96243
*
Burkholderia sp. 383

Site:
position = -107
score = 4.86078
sequence = ATTGTCAACAAC

Gene: Bcep18194_A6494: 2-aminoethylphosphonate ABC transporter, periplasmic component
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
2-aminoethylphosphonate ABC transporter, periplasmic component
Bcep18194_A6495
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383

Gene: Bcep18194_A6495: 2-aminoethylphosphonate ABC transporter, ATP-binding protein
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
2-aminoethylphosphonate ABC transporter, ATP-binding protein
Bcep18194_A6496
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383

Gene: Bcep18194_A6496: 2-aminoethylphosphonate ABC transporter, permease component
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
2-aminoethylphosphonate ABC transporter, permease component
Bamb_3195
*
Burkholderia cepacia AMMD

Site:
position = -66
score = 5.22113
sequence = ATTGTCAACAAT

Gene: Bamb_3195: 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37)
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383

Gene: Bcep18194_A6497: 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37)
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37)
Bamb_3196
 
Burkholderia cepacia AMMD

Gene: Bamb_3196: FAD dependent oxidoreductase
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383

Gene: Bcep18194_A6498: FAD dependent oxidoreductase
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
FAD dependent oxidoreductase
 
CRON 3.
phnA
*
Burkholderia cepacia AMMD

Site:
position = -114
score = 5.22113
sequence = ATTGTTGACAAT

Gene: Bamb_3194: Phosphonoacetate hydrolase (EC 3.11.1.2)
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815
 
Burkholderia pseudomallei K96243
*
Burkholderia sp. 383

Site:
position = -113
score = 4.86078
sequence = GTTGTTGACAAT

Gene: Bcep18194_A6493: Phosphonoacetate hydrolase (EC 3.11.1.2)
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
Phosphonoacetate hydrolase (EC 3.11.1.2)
Bamb_3193
 
Burkholderia cepacia AMMD

Gene: Bamb_3193: NAD-dependent aldehyde dehydrogenases
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383

Gene: Bcep18194_A6492: NAD-dependent aldehyde dehydrogenases
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
NAD-dependent aldehyde dehydrogenases
 
CRON 4.
Bphy_5064
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
*
Burkholderia phymatum STM815

Site:
position = -231
score = 4.35965
sequence = ATTGCCGACAAC

Gene: Bphy_5064: 2-aminoethylphosphonate--pyruvate transaminase
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
*
Burkholderia xenovorans LB400

Site:
position = -213
score = 4.35965
sequence = ATTGCCAACAAC

Gene: Bxe_B1876: 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37)
2-aminoethylphosphonate--pyruvate transaminase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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