Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog CJA_1242 - Oceanospirillales/Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Cellvibrio japonicus Ueda107 3 1
Alcanivorax borkumensis SK2 3 1
Chromohalobacter salexigens DSM 3043
Hahella chejuensis KCTC 2396
Marinomonas sp. MWYL1
Oceanobacter sp. RED65
Oceanospirillum sp. MED92
Reinekea sp. MED297
Marinobacter aqueolei
Marinobacter sp. ELB17
Saccharophagus degradans 2-40
Teredinibacter turnerae T7901
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
uahA
*
Cellvibrio japonicus Ueda107

Site:
position = -39
score = 5.0895
sequence = ACTTGTATCCAAGA

Gene: CJA_1244: Allophanate hydrolase (EC 3.5.1.54)/urea amidolyase
*
Alcanivorax borkumensis SK2

Site:
position = -28
score = 4.33669
sequence = ACTTGTGTACAACC

Gene: ABO_2506: Allophanate hydrolase (EC 3.5.1.54)/urea amidolyase
 
Chromohalobacter salexigens DSM 3043
 
Hahella chejuensis KCTC 2396
 
Marinomonas sp. MWYL1
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
Allophanate hydrolase (EC 3.5.1.54)/urea amidolyase
ureA
 
Cellvibrio japonicus Ueda107

Gene: CJA_1243: Urea carboxylase/Allophanate hydrolase subunit 2
 
Alcanivorax borkumensis SK2
 
Chromohalobacter salexigens DSM 3043
 
Hahella chejuensis KCTC 2396
 
Marinomonas sp. MWYL1
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
Urea carboxylase/Allophanate hydrolase subunit 2
CJA_1242
 
Cellvibrio japonicus Ueda107

Gene: CJA_1242: Transcriptional regulator, GntR family
 
Alcanivorax borkumensis SK2

Gene: ABO_2508: Transcriptional regulator, GntR family
 
Chromohalobacter salexigens DSM 3043
 
Hahella chejuensis KCTC 2396
 
Marinomonas sp. MWYL1
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
Transcriptional regulator, GntR family
ABO_2507
 
Cellvibrio japonicus Ueda107
 
Alcanivorax borkumensis SK2

Gene: ABO_2507: hypothetical protein
 
Chromohalobacter salexigens DSM 3043
 
Hahella chejuensis KCTC 2396
 
Marinomonas sp. MWYL1
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD