Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GcvA - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Glycine metabolism
Effector: Glycine
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 108 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 11 7
Shewanella putrefaciens CN-32 11 7
Shewanella sp W3-18-1 11 7
Shewanella sp ANA-3 11 7
Shewanella sp MR-4 11 7
Shewanella sp MR-7 11 7
Shewanella baltica OS155 11 7
Shewanella denitrificans OS217 8 4
Shewanella frigidimarina NCIMB 400 9 5
Shewanella amazonensis SB2B 10 6
Shewanella loihica PV-4 8 5
Shewanella pealeana ATCC 700345 12 7
Shewanella halifaxensis HAW-EB4 12 7
Shewanella piezotolerans WP3 12 7
Shewanella sediminis HAW-EB3 10 6
Shewanella woodyi ATCC 51908 10 6
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
SO3342
*
Shewanella oneidensis MR-1

Site:
position = -99
score = 5.07761
sequence = ATTATATATTCTAAT

Gene: SO_3342: putative membrane protein
*
Shewanella putrefaciens CN-32

Site:
position = -85
score = 5.00321
sequence = ATTATTTTTTCTAAT

Gene: Sputcn32_2677: putative membrane protein
*
Shewanella sp W3-18-1

Site:
position = -85
score = 5.00321
sequence = ATTATTTTTTCTAAT

Gene: Sputw3181_1334: putative membrane protein
*
Shewanella sp ANA-3

Site:
position = -99
score = 4.8389
sequence = ATGAAATATTCTAAT

Site:
position = -77
score = 4.22307
sequence = TTTAAATAATCTCAT

Gene: Shewana3_1204: putative membrane protein
*
Shewanella sp MR-4

Site:
position = -99
score = 5.07761
sequence = ATTAAATATTCTAAT

Site:
position = -77
score = 4.22307
sequence = TTTAAATAATCTCAT

Gene: Shewmr4_1203: putative membrane protein
*
Shewanella sp MR-7

Site:
position = -99
score = 5.07761
sequence = ATTAAATATTCTAAT

Site:
position = -77
score = 4.22307
sequence = TTTAAATAATCTCAT

Gene: Shewmr7_1274: putative membrane protein
*
Shewanella baltica OS155

Site:
position = -97
score = 5.00321
sequence = ATTAATTTTTCTAAT

Gene: Sbal_3015: putative membrane protein
 
Shewanella denitrificans OS217
*
Shewanella frigidimarina NCIMB 400

Site:
position = -171
score = 4.29993
sequence = ATTATTAAAACTATT

Site:
position = -96
score = 5.01625
sequence = ATTAGATTAATTAAT

Gene: Sfri_0596: putative membrane protein
*
Shewanella amazonensis SB2B

Site:
position = -113
score = 4.58665
sequence = ATAATAAAAACTAAT

Gene: Sama_2463: putative membrane protein
*
Shewanella loihica PV-4

Site:
position = -97
score = 5.07761
sequence = ATTAAAAAATCTAAT

Gene: Shew_1154: putative membrane protein
*
Shewanella pealeana ATCC 700345

Site:
position = -96
score = 5.07761
sequence = ATTAGAAAATGTAAT

Gene: Spea_1141: putative membrane protein
*
Shewanella halifaxensis HAW-EB4

Site:
position = -96
score = 5.07761
sequence = ATTAGAAAATATAAT

Gene: Shal_1186: putative membrane protein
*
Shewanella piezotolerans WP3

Site:
position = -95
score = 5.00321
sequence = ATTAGTTTTTTTAAT

Gene: swp_1289: putative membrane protein
*
Shewanella sediminis HAW-EB3

Site:
position = -97
score = 5.07761
sequence = ATTAAAATATCTAAT

Gene: Ssed_1246: putative membrane protein
*
Shewanella woodyi ATCC 51908

Site:
position = -173
score = 4.57734
sequence = ATTAGCTAAACTAAA

Site:
position = -98
score = 5.63208
sequence = ATTAGAAAAACTAAT

Gene: Swoo_1346: putative membrane protein
putative membrane protein
 
CRON 2.
kbl
*
Shewanella oneidensis MR-1

Site:
position = -148
score = 5.00321
sequence = ATTAGTTTTTATAAT

Gene: SO_4674: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
*
Shewanella putrefaciens CN-32

Site:
position = -148
score = 5.00321
sequence = ATTAGTTTTTATAAT

Gene: Sputcn32_3901: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
*
Shewanella sp W3-18-1

Site:
position = -148
score = 5.00321
sequence = ATTAGTTTTTATAAT

Gene: Sputw3181_0050: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
*
Shewanella sp ANA-3

Site:
position = -148
score = 5.00321
sequence = ATTAGTTTTTATAAT

Gene: Shewana3_4104: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
*
Shewanella sp MR-4

Site:
position = -148
score = 5.00321
sequence = ATTAGTTTTTATAAT

Gene: Shewmr4_3900: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
*
Shewanella sp MR-7

Site:
position = -148
score = 5.00321
sequence = ATTAGTTTTTATAAT

Gene: Shewmr7_3992: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
*
Shewanella baltica OS155

Site:
position = -148
score = 5.00321
sequence = ATTAGTTTTTATAAT

Gene: Sbal_0058: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
*
Shewanella denitrificans OS217

Site:
position = -140
score = 5.69345
sequence = ATTAGAATTTCTAAT

Gene: Sden_3615: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
*
Shewanella frigidimarina NCIMB 400

Site:
position = -191
score = 5.00321
sequence = ATTAGTTTTTTTAAT

Gene: Sfri_3938: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
*
Shewanella amazonensis SB2B

Site:
position = -150
score = 4.58665
sequence = ATTAGTTTTTTTTAT

Gene: Sama_0098: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
 
Shewanella loihica PV-4

Gene: Shew_3709: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
*
Shewanella pealeana ATCC 700345

Site:
position = -147
score = 5.57072
sequence = ATTAGTTTAACTAAT

Gene: Spea_0107: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -147
score = 5.20621
sequence = ATTAGTTTAGCTAAT

Gene: Shal_4215: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
*
Shewanella piezotolerans WP3

Site:
position = -148
score = 5.57072
sequence = ATTAGTTTAACTAAT

Gene: swp_5067: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
*
Shewanella sediminis HAW-EB3

Site:
position = -148
score = 4.69009
sequence = ATTAGTTTTATTCAT

Gene: Ssed_0101: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
*
Shewanella woodyi ATCC 51908

Site:
position = -148
score = 4.58665
sequence = ATTAGTTTTTTTTAT

Gene: Swoo_0065: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
tdh
 
Shewanella oneidensis MR-1

Gene: SO_4673: L-threonine 3-dehydrogenase (EC 1.1.1.103)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_3902: L-threonine 3-dehydrogenase (EC 1.1.1.103)
 
Shewanella sp W3-18-1

Gene: Sputw3181_0049: L-threonine 3-dehydrogenase (EC 1.1.1.103)
 
Shewanella sp ANA-3

Gene: Shewana3_4105: L-threonine 3-dehydrogenase (EC 1.1.1.103)
 
Shewanella sp MR-4

Gene: Shewmr4_3901: L-threonine 3-dehydrogenase (EC 1.1.1.103)
 
Shewanella sp MR-7

Gene: Shewmr7_3993: L-threonine 3-dehydrogenase (EC 1.1.1.103)
 
Shewanella baltica OS155

Gene: Sbal_0057: L-threonine 3-dehydrogenase (EC 1.1.1.103)
 
Shewanella denitrificans OS217

Gene: Sden_3616: L-threonine 3-dehydrogenase (EC 1.1.1.103)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_3939: L-threonine 3-dehydrogenase (EC 1.1.1.103)
 
Shewanella amazonensis SB2B

Gene: Sama_0097: L-threonine 3-dehydrogenase (EC 1.1.1.103)
 
Shewanella loihica PV-4

Gene: Shew_3710: L-threonine 3-dehydrogenase (EC 1.1.1.103)
 
Shewanella pealeana ATCC 700345

Gene: Spea_0106: L-threonine 3-dehydrogenase (EC 1.1.1.103)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_4216: L-threonine 3-dehydrogenase (EC 1.1.1.103)
 
Shewanella piezotolerans WP3

Gene: swp_5068: L-threonine 3-dehydrogenase (EC 1.1.1.103)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_0100: L-threonine 3-dehydrogenase (EC 1.1.1.103)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_0064: L-threonine 3-dehydrogenase (EC 1.1.1.103)
L-threonine 3-dehydrogenase (EC 1.1.1.103)
 
CRON 3.
SO2753
*
Shewanella oneidensis MR-1

Site:
position = -256
score = 5.20621
sequence = ATTAGCTAAACTAAT

Gene: SO_2753: Prolyl endopeptidase (EC 3.4.21.26)
*
Shewanella putrefaciens CN-32

Site:
position = -255
score = 5.26758
sequence = ATTAGCAAATCTAAT

Gene: Sputcn32_1602: Prolyl endopeptidase (EC 3.4.21.26)
*
Shewanella sp W3-18-1

Site:
position = -255
score = 5.26758
sequence = ATTAGCAAATCTAAT

Gene: Sputw3181_2420: Prolyl endopeptidase (EC 3.4.21.26)
*
Shewanella sp ANA-3

Site:
position = -255
score = 5.19317
sequence = ATTAGCAAAACTAAT

Gene: Shewana3_2536: Prolyl endopeptidase (EC 3.4.21.26)
*
Shewanella sp MR-4

Site:
position = -255
score = 5.19317
sequence = ATTAGCAAAACTAAT

Gene: Shewmr4_2373: Prolyl endopeptidase (EC 3.4.21.26)
*
Shewanella sp MR-7

Site:
position = -255
score = 5.19317
sequence = ATTAGCAAAACTAAT

Gene: Shewmr7_2445: Prolyl endopeptidase (EC 3.4.21.26)
*
Shewanella baltica OS155

Site:
position = -254
score = 5.61904
sequence = ATTAGTAATTCTAAT

Gene: Sbal_1741: Prolyl endopeptidase (EC 3.4.21.26)
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
*
Shewanella amazonensis SB2B

Site:
position = -247
score = 5.57072
sequence = ATTAGTTTAACTAAT

Gene: Sama_2091: Prolyl endopeptidase (EC 3.4.21.26)
*
Shewanella loihica PV-4

Site:
position = -336
score = 5.61904
sequence = ATTAGtaTtTCTAAT

Gene: Shew_1522: Prolyl endopeptidase (EC 3.4.21.26)
*
Shewanella pealeana ATCC 700345

Site:
position = -79
score = 5.30297
sequence = ATAAGATTATCTAAT

Gene: Spea_2569: Prolyl endopeptidase (EC 3.4.21.26)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -84
score = 5.06425
sequence = ATAAGATTATCTCAT

Gene: Shal_1686: Prolyl endopeptidase (EC 3.4.21.26)
*
Shewanella piezotolerans WP3

Site:
position = -310
score = 5.55768
sequence = ATTAGtTTtaCTAAT

Gene: swp_1825: Prolyl endopeptidase (EC 3.4.21.26)
*
Shewanella sediminis HAW-EB3

Site:
position = -278
score = 5.21552
sequence = ATTAGTTTTTCTTAT

Gene: Ssed_1852: Prolyl endopeptidase (EC 3.4.21.26)
*
Shewanella woodyi ATCC 51908

Site:
position = -280
score = 5.64512
sequence = ATTAGTTTATCTAAT

Gene: Swoo_2736: Prolyl endopeptidase (EC 3.4.21.26)
Prolyl endopeptidase (EC 3.4.21.26)
 
CRON 4.
sdaA
*
Shewanella oneidensis MR-1

Site:
position = -199
score = 4.41155
sequence = ATCAAAAAAACTAAT

Gene: SO_2248: L-serine dehydratase 1 (EC 4.3.1.17)
*
Shewanella putrefaciens CN-32

Site:
position = -202
score = 4.41155
sequence = ATCAAAAAAACTAAT

Gene: Sputcn32_2171: L-serine dehydratase 1 (EC 4.3.1.17)
*
Shewanella sp W3-18-1

Site:
position = -202
score = 4.41155
sequence = ATCAAAAAAACTAAT

Gene: Sputw3181_1837: L-serine dehydratase 1 (EC 4.3.1.17)
*
Shewanella sp ANA-3

Site:
position = -199
score = 4.41155
sequence = ATCAAAAAAACTAAT

Gene: Shewana3_2295: L-serine dehydratase 1 (EC 4.3.1.17)
*
Shewanella sp MR-4

Site:
position = -199
score = 4.41155
sequence = ATCAAAAAAACTAAT

Gene: Shewmr4_1725: L-serine dehydratase 1 (EC 4.3.1.17)
*
Shewanella sp MR-7

Site:
position = -199
score = 4.41155
sequence = ATCAAAAAAACTAAT

Gene: Shewmr7_1804: L-serine dehydratase 1 (EC 4.3.1.17)
*
Shewanella baltica OS155

Site:
position = -197
score = 4.37433
sequence = ATTTAAAAAACTAAT

Gene: Sbal_2417: L-serine dehydratase 1 (EC 4.3.1.17)
*
Shewanella denitrificans OS217

Site:
position = -208
score = 5.21552
sequence = ATAAGAAAAACTAAT

Gene: Sden_1946: L-serine dehydratase 1 (EC 4.3.1.17)
*
Shewanella frigidimarina NCIMB 400

Site:
position = -140
score = 4.48595
sequence = ATCAAAAAATCTAAT

Gene: Sfri_2402: L-serine dehydratase 1 (EC 4.3.1.17)
*
Shewanella amazonensis SB2B

Site:
position = -189
score = 4.58665
sequence = ATAAAAATAACTAAT

Gene: Sama_1325: L-serine dehydratase 1 (EC 4.3.1.17)
*
Shewanella loihica PV-4

Site:
position = -184
score = 4.13562
sequence = TTGAAAAAAACTAAT

Gene: Shew_1625: L-serine dehydratase 1 (EC 4.3.1.17)
*
Shewanella pealeana ATCC 700345

Site:
position = -232
score = 5.71953
sequence = ATTAGATTATCTAAT

Gene: Spea_1538: L-serine dehydratase 1 (EC 4.3.1.17)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -244
score = 5.28062
sequence = ATTAGCTTATCTAAT

Gene: Shal_1608: L-serine dehydratase 1 (EC 4.3.1.17)
*
Shewanella piezotolerans WP3

Site:
position = -246
score = 5.64512
sequence = ATTAGTTTATCTAAT

Gene: swp_1748: L-serine dehydratase 1 (EC 4.3.1.17)
*
Shewanella sediminis HAW-EB3

Site:
position = -187
score = 4.8389
sequence = ATTAAAAAATCTCAT

Gene: Ssed_2838: L-serine dehydratase 1 (EC 4.3.1.17)
*
Shewanella woodyi ATCC 51908

Site:
position = -206
score = 4.65174
sequence = CTTAGCTTATCTAAT

Site:
position = -179
score = 4.76449
sequence = ATTAAAAAAACTCAT

Gene: Swoo_1806: L-serine dehydratase 1 (EC 4.3.1.17)
L-serine dehydratase 1 (EC 4.3.1.17)
 
CRON 5.
SO3987
*
Shewanella oneidensis MR-1

Site:
position = -109
score = 5.55768
sequence = ATTAGTATAACTAAT

Gene: SO_3987: hypothetical protein
*
Shewanella putrefaciens CN-32

Site:
position = -109
score = 5.55768
sequence = ATTAGTATAACTAAT

Gene: Sputcn32_0679: hypothetical protein
*
Shewanella sp W3-18-1

Site:
position = -109
score = 5.55768
sequence = ATTAGTATAACTAAT

Gene: Sputw3181_3492: hypothetical protein
*
Shewanella sp ANA-3

Site:
position = -109
score = 5.55768
sequence = ATTAGTATAACTAAT

Gene: Shewana3_0651: hypothetical protein
*
Shewanella sp MR-4

Site:
position = -109
score = 5.55768
sequence = ATTAGTATAACTAAT

Gene: Shewmr4_0652: hypothetical protein
*
Shewanella sp MR-7

Site:
position = -109
score = 5.55768
sequence = ATTAGTATAACTAAT

Gene: Shewmr7_3370: hypothetical protein
*
Shewanella baltica OS155

Site:
position = -109
score = 5.55768
sequence = ATTAGTATAACTAAT

Gene: Sbal_0787: hypothetical protein
 
Shewanella denitrificans OS217

Gene: Sden_2983: hypothetical protein
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_0534: hypothetical protein
 
Shewanella amazonensis SB2B

Gene: Sama_0602: hypothetical protein
 
Shewanella loihica PV-4

Gene: Shew_0778: hypothetical protein
 
Shewanella pealeana ATCC 700345

Gene: Spea_0734: hypothetical protein
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_0787: hypothetical protein
 
Shewanella piezotolerans WP3

Gene: swp_4346: hypothetical protein
 
Shewanella sediminis HAW-EB3

Gene: Ssed_0816: hypothetical protein
 
Shewanella woodyi ATCC 51908

Gene: Swoo_3763: hypothetical protein
hypothetical protein
 
CRON 6.
gcvA
*
Shewanella oneidensis MR-1

Site:
position = -38
score = 5.63208
sequence = ATTAGAAAAACTAAT

Gene: SO_1533: Glycine cleavage system transcriptional activator GcvA
*
Shewanella putrefaciens CN-32

Site:
position = -38
score = 5.63208
sequence = ATTAGAAAAACTAAT

Gene: Sputcn32_1282: Glycine cleavage system transcriptional activator GcvA
*
Shewanella sp W3-18-1

Site:
position = -38
score = 5.63208
sequence = ATTAGAAAAACTAAT

Gene: Sputw3181_2824: Glycine cleavage system transcriptional activator GcvA
*
Shewanella sp ANA-3

Site:
position = -38
score = 5.63208
sequence = ATTAGAAAAACTAAT

Gene: Shewana3_2894: Glycine cleavage system transcriptional activator GcvA
*
Shewanella sp MR-4

Site:
position = -38
score = 5.63208
sequence = ATTAGAAAAACTAAT

Gene: Shewmr4_2724: Glycine cleavage system transcriptional activator GcvA
*
Shewanella sp MR-7

Site:
position = -38
score = 5.63208
sequence = ATTAGAAAAACTAAT

Gene: Shewmr7_2795: Glycine cleavage system transcriptional activator GcvA
*
Shewanella baltica OS155

Site:
position = -38
score = 5.63208
sequence = ATTAGAAAAACTAAT

Gene: Sbal_1364: Glycine cleavage system transcriptional activator GcvA
*
Shewanella denitrificans OS217

Site:
position = -54
score = 5.21552
sequence = ATTAGAAAAACTTAT

Gene: Sden_2565: Glycine cleavage system transcriptional activator GcvA
*
Shewanella frigidimarina NCIMB 400

Site:
position = -38
score = 5.63208
sequence = ATTAGAAAAACTAAT

Gene: Sfri_2783: Glycine cleavage system transcriptional activator GcvA
*
Shewanella amazonensis SB2B

Site:
position = -38
score = 5.63208
sequence = ATTAGAAAAACTAAT

Gene: Sama_2429: Glycine cleavage system transcriptional activator GcvA
*
Shewanella loihica PV-4

Site:
position = -38
score = 5.63208
sequence = ATTAGAAAAACTAAT

Gene: Shew_2764: Glycine cleavage system transcriptional activator GcvA
*
Shewanella pealeana ATCC 700345

Site:
position = -38
score = 5.63208
sequence = ATTAGAAAAACTAAT

Gene: Spea_2984: Glycine cleavage system transcriptional activator GcvA
*
Shewanella halifaxensis HAW-EB4

Site:
position = -38
score = 5.63208
sequence = ATTAGAAAAACTAAT

Gene: Shal_3073: Glycine cleavage system transcriptional activator GcvA
*
Shewanella piezotolerans WP3

Site:
position = -38
score = 5.63208
sequence = ATTAGAAAAACTAAT

Gene: swp_3612: Glycine cleavage system transcriptional activator GcvA
*
Shewanella sediminis HAW-EB3

Site:
position = -38
score = 5.63208
sequence = ATTAGAAAAACTAAT

Gene: Ssed_3322: Glycine cleavage system transcriptional activator GcvA
*
Shewanella woodyi ATCC 51908

Site:
position = -38
score = 5.63208
sequence = ATTAGAAAAACTAAT

Gene: Swoo_3471: Glycine cleavage system transcriptional activator GcvA
Glycine cleavage system transcriptional activator GcvA
SO1534
 
Shewanella oneidensis MR-1

Gene: SO_1534: Predicted hydrolase of the alpha/beta-hydrolase fold
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1283: Predicted hydrolase of the alpha/beta-hydrolase fold
 
Shewanella sp W3-18-1

Gene: Sputw3181_2823: Predicted hydrolase of the alpha/beta-hydrolase fold
 
Shewanella sp ANA-3

Gene: Shewana3_2893: Predicted hydrolase of the alpha/beta-hydrolase fold
 
Shewanella sp MR-4

Gene: Shewmr4_2723: Predicted hydrolase of the alpha/beta-hydrolase fold
 
Shewanella sp MR-7

Gene: Shewmr7_2794: Predicted hydrolase of the alpha/beta-hydrolase fold
 
Shewanella baltica OS155

Gene: Sbal_1365: Predicted hydrolase of the alpha/beta-hydrolase fold
 
Shewanella denitrificans OS217

Gene: Sden_2564: Predicted hydrolase of the alpha/beta-hydrolase fold
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2782: Predicted hydrolase of the alpha/beta-hydrolase fold
 
Shewanella amazonensis SB2B

Gene: Sama_2428: Predicted hydrolase of the alpha/beta-hydrolase fold
 
Shewanella loihica PV-4

Gene: Shew_2763: hypothetical protein
 
Shewanella pealeana ATCC 700345

Gene: Spea_2983: Predicted hydrolase of the alpha/beta-hydrolase fold
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_3072: Predicted hydrolase of the alpha/beta-hydrolase fold
 
Shewanella piezotolerans WP3

Gene: swp_3611: Predicted hydrolase of the alpha/beta-hydrolase fold
 
Shewanella sediminis HAW-EB3

Gene: Ssed_3321: Predicted hydrolase of the alpha/beta-hydrolase fold
 
Shewanella woodyi ATCC 51908

Gene: Swoo_3470: Predicted hydrolase of the alpha/beta-hydrolase fold
Predicted hydrolase of the alpha/beta-hydrolase fold
 
CRON 7.
gcvT
*
Shewanella oneidensis MR-1

Site:
position = -296
score = 5.46777
sequence = ATGAGAAAATCTAAT

Gene: SO_0779: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Shewanella putrefaciens CN-32

Site:
position = -152
score = 5.46777
sequence = ATGAGAAAATCTAAT

Gene: Sputcn32_3211: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Shewanella sp W3-18-1

Site:
position = -152
score = 5.46777
sequence = ATGAGAAAATCTAAT

Gene: Sputw3181_0730: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Shewanella sp ANA-3

Site:
position = -296
score = 5.46777
sequence = ATGAGAAAATCTAAT

Gene: Shewana3_3501: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Shewanella sp MR-4

Site:
position = -298
score = 5.46777
sequence = ATGAGAAAATCTAAT

Gene: Shewmr4_3331: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Shewanella sp MR-7

Site:
position = -297
score = 5.46777
sequence = ATGAGAAAATCTAAT

Gene: Shewmr7_0622: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Shewanella baltica OS155

Site:
position = -348
score = 5.46777
sequence = ATGAGAAAATCTAAT

Gene: Sbal_0617: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Shewanella denitrificans OS217

Site:
position = -142
score = 5.55768
sequence = ATTAGTAAAACTAAT

Gene: Sden_0833: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Shewanella frigidimarina NCIMB 400

Site:
position = -131
score = 5.20621
sequence = ATTAGCTAAACTAAT

Gene: Sfri_3151: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Shewanella amazonensis SB2B

Site:
position = -141
score = 5.21552
sequence = ATAAGAAAAACTAAT

Gene: Sama_2721: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Shewanella loihica PV-4

Site:
position = -371
score = 4.76449
sequence = ATGAGAAAAAGTAAT

Gene: Shew_3064: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Shewanella pealeana ATCC 700345

Site:
position = -233
score = 5.39337
sequence = ATGAGAAAAACTAAT

Gene: Spea_3303: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -213
score = 5.39337
sequence = ATGAGAAAAACTAAT

Gene: Shal_3375: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Shewanella piezotolerans WP3

Site:
position = -163
score = 5.39337
sequence = ATGAGAAAAACTAAT

Gene: swp_0913: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Shewanella sediminis HAW-EB3

Site:
position = -213
score = 4.76449
sequence = ATGAGAAAAAGTAAT

Gene: Ssed_3675: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Shewanella woodyi ATCC 51908

Site:
position = -229
score = 4.76449
sequence = ATGAGAAAAAGTAAT

Gene: Swoo_3969: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
gcvH
 
Shewanella oneidensis MR-1

Gene: SO_0780: Glycine cleavage system H protein
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_3210: Glycine cleavage system H protein
 
Shewanella sp W3-18-1

Gene: Sputw3181_0731: Glycine cleavage system H protein
 
Shewanella sp ANA-3

Gene: Shewana3_3500: Glycine cleavage system H protein
 
Shewanella sp MR-4

Gene: Shewmr4_3330: Glycine cleavage system H protein
 
Shewanella sp MR-7

Gene: Shewmr7_0623: Glycine cleavage system H protein
 
Shewanella baltica OS155

Gene: Sbal_0618: Glycine cleavage system H protein
 
Shewanella denitrificans OS217

Gene: Sden_0834: Glycine cleavage system H protein
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_3150: Glycine cleavage system H protein
 
Shewanella amazonensis SB2B

Gene: Sama_2720: Glycine cleavage system H protein
 
Shewanella loihica PV-4

Gene: Shew_3063: Glycine cleavage system H protein
 
Shewanella pealeana ATCC 700345

Gene: Spea_3302: Glycine cleavage system H protein
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_3374: Glycine cleavage system H protein
 
Shewanella piezotolerans WP3

Gene: swp_0914: Glycine cleavage system H protein
 
Shewanella sediminis HAW-EB3

Gene: Ssed_3674: Glycine cleavage system H protein
 
Shewanella woodyi ATCC 51908

Gene: Swoo_3968: Glycine cleavage system H protein
Glycine cleavage system H protein
gcvP
 
Shewanella oneidensis MR-1

Gene: SO_0781: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_3209: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Shewanella sp W3-18-1

Gene: Sputw3181_0732: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Shewanella sp ANA-3

Gene: Shewana3_3499: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Shewanella sp MR-4

Gene: Shewmr4_3329: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Shewanella sp MR-7

Gene: Shewmr7_0624: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Shewanella baltica OS155

Gene: Sbal_0619: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Shewanella denitrificans OS217

Gene: Sden_0835: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_3149: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Shewanella amazonensis SB2B

Gene: Sama_2719: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Shewanella loihica PV-4

Gene: Shew_3062: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Shewanella pealeana ATCC 700345

Gene: Spea_3301: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_3373: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Shewanella piezotolerans WP3

Gene: swp_0915: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_3673: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_3967: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
CRON 8.
sdaC
 
Shewanella oneidensis MR-1

Gene: SO_0919: Serine transporter
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_0861: Serine transporter
 
Shewanella sp W3-18-1

Gene: Sputw3181_3314: Serine transporter
 
Shewanella sp ANA-3

Gene: Shewana3_3365: Serine transporter
 
Shewanella sp MR-4

Gene: Shewmr4_0761: Serine transporter
 
Shewanella sp MR-7

Gene: Shewmr7_3262: Serine transporter
 
Shewanella baltica OS155

Gene: Sbal_0765: Serine transporter
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2127: Serine transporter
 
Shewanella amazonensis SB2B

Gene: Sama_2772: Serine transporter
 
Shewanella loihica PV-4

Gene: Shew_0739: Serine transporter
*
Shewanella pealeana ATCC 700345

Site:
position = -400
score = 5.64512
sequence = ATTAGATTAACTAAT

Gene: Spea_0771: Serine transporter
*
Shewanella halifaxensis HAW-EB4

Site:
position = -399
score = 5.28062
sequence = ATTAGATTAGCTAAT

Gene: Shal_0823: Serine transporter
*
Shewanella piezotolerans WP3

Site:
position = -400
score = 5.11954
sequence = ATTAGATTGACTAAT

Gene: swp_4263: Serine transporter
 
Shewanella sediminis HAW-EB3

Gene: Ssed_0858: Serine transporter
 
Shewanella woodyi ATCC 51908

Gene: Swoo_0863: Serine transporter
Serine transporter
sdaA2
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_0687: L-serine dehydratase (EC 4.3.1.17)
 
Shewanella amazonensis SB2B

Gene: Sama_2771: L-serine dehydratase (EC 4.3.1.17)
 
Shewanella loihica PV-4

Gene: Shew_0740: L-serine dehydratase (EC 4.3.1.17)
 
Shewanella pealeana ATCC 700345

Gene: Spea_0772: L-serine dehydratase (EC 4.3.1.17)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_0824: L-serine dehydratase (EC 4.3.1.17)
 
Shewanella piezotolerans WP3

Gene: swp_4262: L-serine dehydratase (EC 4.3.1.17)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_0859: L-serine dehydratase (EC 4.3.1.17)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_0864: L-serine dehydratase (EC 4.3.1.17)
L-serine dehydratase (EC 4.3.1.17)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD