Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Atu2740 - Rhizobiales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Sugar utilization
Effector:
Phylum: Proteobacteria/Alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Agrobacterium tumefaciens str. C58 (Cereon) 9 3
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42
Rhizobium leguminosarum bv. viciae 3841
Rhizobium sp. NGR234
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021 9 3
Xanthobacter autotrophicus Py2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
Atu2739
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -112
score = 4.91856
sequence = GTTGTCTGATAAC

Gene: Atu2739: putative D-2-hydroxyglutarate dehydrogenase
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
*
Sinorhizobium meliloti 1021

Site:
position = -124
score = 4.91856
sequence = GTTGTCTGATAAC

Gene: SMa0244: putative D-2-hydroxyglutarate dehydrogenase
 
Xanthobacter autotrophicus Py2
putative D-2-hydroxyglutarate dehydrogenase
Atu2740
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu2740: Transcriptional regulator, GntR family
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMa0246: Transcriptional regulator, GntR family
 
Xanthobacter autotrophicus Py2
Transcriptional regulator, GntR family
 
CRON 2.
Atu2738
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -94
score = 4.91856
sequence = GTTATCAGACAAC

Gene: Atu2738: Nucleoside-diphosphate-sugar epimerases
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
*
Sinorhizobium meliloti 1021

Site:
position = -83
score = 4.91856
sequence = GTTATCAGACAAC

Gene: SMa0241: Nucleoside-diphosphate-sugar epimerases
 
Xanthobacter autotrophicus Py2
Nucleoside-diphosphate-sugar epimerases
Atu2737
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu2737: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL3773: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMa0237: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases
 
Xanthobacter autotrophicus Py2
3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases
Atu2736
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu2736: Dihydroxyacid dehydratase/phosphogluconate dehydratase
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1

Gene: Meso_4493: Dihydroxyacid dehydratase/phosphogluconate dehydratase
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42

Gene: RHE_CH03347: Dihydroxyacid dehydratase/phosphogluconate dehydratase
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL3772: Dihydroxyacid dehydratase/phosphogluconate dehydratase
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMa0235: Dihydroxyacid dehydratase/phosphogluconate dehydratase
 
Xanthobacter autotrophicus Py2
Dihydroxyacid dehydratase/phosphogluconate dehydratase
 
CRON 3.
Atu2741
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -66
score = 5.58226
sequence = GTTGTCAGACATC

Gene: Atu2741: Fumarylacetoacetate (FAA) hydrolase family protein
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
*
Sinorhizobium meliloti 1021

Site:
position = -48
score = 5.58226
sequence = GTTGTCAGACATC

Gene: SMa0247: Fumarylacetoacetate (FAA) hydrolase family protein
 
Xanthobacter autotrophicus Py2
Fumarylacetoacetate (FAA) hydrolase family protein
Atu2742
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu2742: TRAP-type C4-dicarboxylate transport system, small permease component
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMa0249: TRAP-type C4-dicarboxylate transport system, small permease component
 
Xanthobacter autotrophicus Py2
TRAP-type C4-dicarboxylate transport system, small permease component
Atu2743
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu2743: TRAP-type C4-dicarboxylate transport system, large permease component
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMa0250: TRAP-type C4-dicarboxylate transport system, large permease component
 
Xanthobacter autotrophicus Py2
TRAP-type C4-dicarboxylate transport system, large permease component
Atu2744
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu2744: TRAP-type C4-dicarboxylate transport system, periplasmic component
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMa0252: TRAP-type C4-dicarboxylate transport system, periplasmic component
 
Xanthobacter autotrophicus Py2
TRAP-type C4-dicarboxylate transport system, periplasmic component
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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