Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog FabR - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid biosynthesis
Effector: Unsaturated acyl-ACP; Unsaturated acyl-CoA
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 118 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 8 7
Shewanella putrefaciens CN-32 8 7
Shewanella sp W3-18-1 8 7
Shewanella sp ANA-3 8 7
Shewanella sp MR-4 8 7
Shewanella sp MR-7 8 7
Shewanella baltica OS155 7 7
Shewanella denitrificans OS217 7 6
Shewanella frigidimarina NCIMB 400 7 6
Shewanella amazonensis SB2B 8 7
Shewanella loihica PV-4 12 8
Shewanella pealeana ATCC 700345 14 9
Shewanella halifaxensis HAW-EB4 14 9
Shewanella piezotolerans WP3 13 9
Shewanella sediminis HAW-EB3 11 7
Shewanella woodyi ATCC 51908 11 8
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
fabR
*
Shewanella oneidensis MR-1

Site:
position = -119
score = 6.34668
sequence = AGCGTACAGCTGTAAGCT

Gene: SO_0198: Unsaturated fatty acid biosythesis repressor FabR, TetR family
*
Shewanella putrefaciens CN-32

Site:
position = -119
score = 6.19576
sequence = AGCGTACATCTGTAAGCT

Gene: Sputcn32_3541: Unsaturated fatty acid biosythesis repressor FabR, TetR family
*
Shewanella sp W3-18-1

Site:
position = -119
score = 6.19576
sequence = AGCGTACATCTGTAAGCT

Gene: Sputw3181_3678: Unsaturated fatty acid biosythesis repressor FabR, TetR family
*
Shewanella sp ANA-3

Site:
position = -119
score = 6.23286
sequence = AGCGTACAACTGTAAGCT

Gene: Shewana3_0178: Unsaturated fatty acid biosythesis repressor FabR, TetR family
*
Shewanella sp MR-4

Site:
position = -119
score = 6.23286
sequence = AGCGTACAACTGTAAGCT

Gene: Shewmr4_0177: Unsaturated fatty acid biosythesis repressor FabR, TetR family
*
Shewanella sp MR-7

Site:
position = -119
score = 6.23286
sequence = AGCGTACAACTGTAAGCT

Gene: Shewmr7_0172: Unsaturated fatty acid biosythesis repressor FabR, TetR family
*
Shewanella baltica OS155

Site:
position = -119
score = 6.19576
sequence = AGCGTACATCTGTAAGCT

Gene: Sbal_4180: Unsaturated fatty acid biosythesis repressor FabR, TetR family
*
Shewanella denitrificans OS217

Site:
position = -121
score = 6.19576
sequence = AGCGTACATCTGTAAGCT

Gene: Sden_0230: Unsaturated fatty acid biosythesis repressor FabR, TetR family
*
Shewanella frigidimarina NCIMB 400

Site:
position = -121
score = 6.21733
sequence = AGCGTACAATTGTACGCT

Gene: Sfri_0124: Unsaturated fatty acid biosythesis repressor FabR, TetR family
*
Shewanella amazonensis SB2B

Site:
position = -119
score = 6.34668
sequence = AGCGTACAGCTGTAAGCT

Gene: Sama_0192: Unsaturated fatty acid biosythesis repressor FabR, TetR family
*
Shewanella loihica PV-4

Site:
position = -114
score = 6.01768
sequence = AGCGTACAGCTGTAAGCC

Gene: Shew_0137: Unsaturated fatty acid biosythesis repressor FabR, TetR family
*
Shewanella pealeana ATCC 700345

Site:
position = -55
score = 5.96505
sequence = AGCGTACATCTGTACGCC

Gene: Spea_0163: Unsaturated fatty acid biosythesis repressor FabR, TetR family
*
Shewanella halifaxensis HAW-EB4

Site:
position = -55
score = 6.29404
sequence = AGCGTACATCTGTACGCT

Gene: Shal_4155: Unsaturated fatty acid biosythesis repressor FabR, TetR family
*
Shewanella piezotolerans WP3

Site:
position = -118
score = 6.44496
sequence = AGCGTACAGCTGTACGCT

Gene: swp_0205: Unsaturated fatty acid biosythesis repressor FabR, TetR family
*
Shewanella sediminis HAW-EB3

Site:
position = -129
score = 6.29404
sequence = AGCGTACATCTGTACGCT

Gene: Ssed_4339: Unsaturated fatty acid biosythesis repressor FabR, TetR family
*
Shewanella woodyi ATCC 51908

Site:
position = -128
score = 6.29404
sequence = AGCGTACATCTGTACGCT

Gene: Swoo_4711: Unsaturated fatty acid biosythesis repressor FabR, TetR family
Unsaturated fatty acid biosythesis repressor FabR, TetR family
 
CRON 2.
OLE1
*
Shewanella oneidensis MR-1

Site:
position = -42
score = 6.34668
sequence = AGCTTACAGCTGTACGCT

Gene: SO_0197: Fatty acid desaturase (EC 1.14.19.1)
*
Shewanella putrefaciens CN-32

Site:
position = -43
score = 6.19576
sequence = AGCTTACAGATGTACGCT

Gene: Sputcn32_3542: Fatty acid desaturase (EC 1.14.19.1)
*
Shewanella sp W3-18-1

Site:
position = -43
score = 6.19576
sequence = AGCTTACAGATGTACGCT

Gene: Sputw3181_3679: Fatty acid desaturase (EC 1.14.19.1)
*
Shewanella sp ANA-3

Site:
position = -21
score = 6.23286
sequence = AGCTTACAGTTGTACGCT

Gene: Shewana3_0177: Fatty acid desaturase (EC 1.14.19.1)
*
Shewanella sp MR-4

Site:
position = -21
score = 6.23286
sequence = AGCTTACAGTTGTACGCT

Gene: Shewmr4_0176: Fatty acid desaturase (EC 1.14.19.1)
*
Shewanella sp MR-7

Site:
position = -21
score = 6.23286
sequence = AGCTTACAGTTGTACGCT

Gene: Shewmr7_0171: Fatty acid desaturase (EC 1.14.19.1)
*
Shewanella baltica OS155

Site:
position = -43
score = 6.19576
sequence = AGCTTACAGATGTACGCT

Gene: Sbal_4181: Fatty acid desaturase (EC 1.14.19.1)
*
Shewanella denitrificans OS217

Site:
position = -41
score = 6.19576
sequence = AGCTTACAGATGTACGCT

Gene: Sden_0229: Fatty acid desaturase (EC 1.14.19.1)
*
Shewanella frigidimarina NCIMB 400

Site:
position = -53
score = 6.21733
sequence = AGCGTACAATTGTACGCT

Gene: Sfri_0123: Fatty acid desaturase (EC 1.14.19.1)
*
Shewanella amazonensis SB2B

Site:
position = -29
score = 6.34668
sequence = AGCTTACAGCTGTACGCT

Gene: Sama_0191: Fatty acid desaturase (EC 1.14.19.1)
*
Shewanella loihica PV-4

Site:
position = -43
score = 6.01768
sequence = GGCTTACAGCTGTACGCT

Gene: Shew_0136: Fatty acid desaturase (EC 1.14.19.1)
*
Shewanella pealeana ATCC 700345

Site:
position = -9
score = 5.96505
sequence = GGCGTACAGATGTACGCT

Gene: Spea_0162: Fatty acid desaturase (EC 1.14.19.1)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -40
score = 6.29404
sequence = AGCGTACAGATGTACGCT

Gene: Shal_4156: Fatty acid desaturase (EC 1.14.19.1)
*
Shewanella piezotolerans WP3

Site:
position = -40
score = 6.44496
sequence = AGCGTACAGCTGTACGCT

Gene: swp_0204: Fatty acid desaturase (EC 1.14.19.1)
*
Shewanella sediminis HAW-EB3

Site:
position = -41
score = 6.29404
sequence = AGCGTACAGATGTACGCT

Gene: Ssed_4340: Fatty acid desaturase (EC 1.14.19.1)
*
Shewanella woodyi ATCC 51908

Site:
position = -41
score = 6.29404
sequence = AGCGTACAGATGTACGCT

Gene: Swoo_4712: Fatty acid desaturase (EC 1.14.19.1)
Fatty acid desaturase (EC 1.14.19.1)
 
CRON 3.
hylII
*
Shewanella oneidensis MR-1

Site:
position = -114
score = 6.51915
sequence = AGCGTACACGTGTAAGCT

Gene: SO_2447: COG1272: Predicted membrane protein hemolysin III homolog
*
Shewanella putrefaciens CN-32

Site:
position = -85
score = 6.3191
sequence = AGCTTACAAGTGTACGCT

Gene: Sputcn32_1920: COG1272: Predicted membrane protein hemolysin III homolog
*
Shewanella sp W3-18-1

Site:
position = -85
score = 6.3191
sequence = AGCTTACAAGTGTACGCT

Gene: Sputw3181_2088: COG1272: Predicted membrane protein hemolysin III homolog
*
Shewanella sp ANA-3

Site:
position = -84
score = 6.42087
sequence = AGCTTACACGTGTAAGCT

Gene: Shewana3_1934: COG1272: Predicted membrane protein hemolysin III homolog
*
Shewanella sp MR-4

Site:
position = -84
score = 6.42087
sequence = AGCTTACACGTGTAAGCT

Gene: Shewmr4_1879: COG1272: Predicted membrane protein hemolysin III homolog
*
Shewanella sp MR-7

Site:
position = -84
score = 6.42087
sequence = AGCTTACACGTGTAAGCT

Gene: Shewmr7_2099: COG1272: Predicted membrane protein hemolysin III homolog
*
Shewanella baltica OS155

Site:
position = -85
score = 6.3191
sequence = AGCTTACAAGTGTACGCT

Gene: Sbal_2325: COG1272: Predicted membrane protein hemolysin III homolog
*
Shewanella denitrificans OS217

Site:
position = -84
score = 5.93194
sequence = AGCTTACACGCGTACGCT

Gene: Sden_1768: COG1272: Predicted membrane protein hemolysin III homolog
*
Shewanella frigidimarina NCIMB 400

Site:
position = -94
score = 5.41151
sequence = AGCTTACACGTGTTCACC

Gene: Sfri_1873: COG1272: Predicted membrane protein hemolysin III homolog
*
Shewanella amazonensis SB2B

Site:
position = -89
score = 5.79307
sequence = AGCGTACACATGTACTCT

Gene: Sama_1862: COG1272: Predicted membrane protein hemolysin III homolog
*
Shewanella loihica PV-4

Site:
position = -90
score = 6.05128
sequence = GGCGTACACATGTACGCT

Gene: Shew_2098: COG1272: Predicted membrane protein hemolysin III homolog
*
Shewanella pealeana ATCC 700345

Site:
position = -36
score = 6.32772
sequence = AGCTTACACGTGTTCGCT

Gene: Spea_2385: COG1272: Predicted membrane protein hemolysin III homolog
*
Shewanella halifaxensis HAW-EB4

Site:
position = -87
score = 6.06871
sequence = AGCGTACACGTGTGCGCT

Gene: Shal_1898: COG1272: Predicted membrane protein hemolysin III homolog
*
Shewanella piezotolerans WP3

Site:
position = -130
score = 6.32772
sequence = AGCTAACACGTGTACGCT

Gene: swp_2328: COG1272: Predicted membrane protein hemolysin III homolog
*
Shewanella sediminis HAW-EB3

Site:
position = -88
score = 6.61743
sequence = AGCGTACACGTGTACGCT

Gene: Ssed_2012: COG1272: Predicted membrane protein hemolysin III homolog
*
Shewanella woodyi ATCC 51908

Site:
position = -88
score = 6.51915
sequence = AGCTTACACGTGTACGCT

Gene: Swoo_2594: COG1272: Predicted membrane protein hemolysin III homolog
COG1272: Predicted membrane protein hemolysin III homolog
 
CRON 4.
fabA
*
Shewanella oneidensis MR-1

Site:
position = -53
score = 6.32772
sequence = AGCTTACACGTGTTCGCT

Gene: SO_1856: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Shewanella putrefaciens CN-32

Site:
position = -54
score = 6.32772
sequence = AGCTTACACGTGTTCGCT

Gene: Sputcn32_1637: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Shewanella sp W3-18-1

Site:
position = -54
score = 6.32772
sequence = AGCTTACACGTGTTCGCT

Gene: Sputw3181_2388: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Shewanella sp ANA-3

Site:
position = -54
score = 6.32772
sequence = AGCTTACACGTGTTCGCT

Gene: Shewana3_1606: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Shewanella sp MR-4

Site:
position = -53
score = 6.32772
sequence = AGCTTACACGTGTTCGCT

Gene: Shewmr4_1545: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Shewanella sp MR-7

Site:
position = -54
score = 6.32772
sequence = AGCTTACACGTGTTCGCT

Gene: Shewmr7_1612: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Shewanella baltica OS155

Site:
position = -54
score = 6.32772
sequence = AGCTTACACGTGTTCGCT

Gene: Sbal_2565: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Shewanella denitrificans OS217

Site:
position = -60
score = 6.33976
sequence = AGCGTACACCTGTTCGCT

Gene: Sden_2465: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Shewanella frigidimarina NCIMB 400

Site:
position = -60
score = 6.32772
sequence = AGCTTACACGTGTTCGCT

Gene: Sfri_2656: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Shewanella amazonensis SB2B

Site:
position = -58
score = 6.01076
sequence = GGCGTACAGGTGTTCGCT

Gene: Sama_1605: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Shewanella loihica PV-4

Site:
position = -55
score = 5.99872
sequence = GGCGTACACGTGTTAGCT

Gene: Shew_1817: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Shewanella pealeana ATCC 700345

Site:
position = -55
score = 6.426
sequence = AGCGTACACGTGTTCGCT

Gene: Spea_1951: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -55
score = 6.426
sequence = AGCGTACACGTGTTCGCT

Gene: Shal_2348: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Shewanella piezotolerans WP3

Site:
position = -55
score = 6.426
sequence = AGCGTACACGTGTTCGCT

Gene: swp_2802: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Shewanella sediminis HAW-EB3

Site:
position = -57
score = 6.32772
sequence = AGCTTACACGTGTTCGCT

Gene: Ssed_2468: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Shewanella woodyi ATCC 51908

Site:
position = -56
score = 6.32772
sequence = AGCTTACACGTGTTCGCT

Gene: Swoo_2148: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
 
CRON 5.
lcfE
*
Shewanella oneidensis MR-1

Site:
position = -121
score = 4.81568
sequence = GCGGTACACTTGTAAGCT

Gene: SO_0075: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Shewanella putrefaciens CN-32

Site:
position = -35
score = 4.81568
sequence = GCGGTACACTTGTAAGCT

Gene: Sputcn32_0061: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Shewanella sp W3-18-1

Site:
position = -35
score = 4.81568
sequence = GCGGTACACTTGTAAGCT

Gene: Sputw3181_4017: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Shewanella sp ANA-3

Site:
position = -34
score = 4.81568
sequence = GCGGTACACTTGTAAGCT

Gene: Shewana3_0080: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Shewanella sp MR-4

Site:
position = -34
score = 4.81568
sequence = GCGGTACACTTGTAAGCT

Gene: Shewmr4_0078: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Shewanella sp MR-7

Site:
position = -34
score = 4.81568
sequence = GCGGTACACTTGTAAGCT

Gene: Shewmr7_0076: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Shewanella baltica OS155

Site:
position = -34
score = 4.81568
sequence = GCGGTACACTTGTAAGCT

Gene: Sbal_4274: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Shewanella denitrificans OS217

Site:
position = -32
score = 4.57285
sequence = CAGGTACAAGTGTAAGCT

Gene: Sden_0072: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Shewanella frigidimarina NCIMB 400

Site:
position = -34
score = 4.62424
sequence = GCGGAACACTTGTAAGCT

Gene: Sfri_3973: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Shewanella amazonensis SB2B

Site:
position = -59
score = 4.62424
sequence = GAGGAACACTTGTAAGCT

Gene: Sama_3571: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Shewanella loihica PV-4

Site:
position = -35
score = 4.67113
sequence = CAGGTACAAGTGTACGCT

Gene: Shew_3776: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Shewanella pealeana ATCC 700345

Site:
position = -34
score = 4.62424
sequence = GCGGAACACTTGTAAGCT

Gene: Spea_4186: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -34
score = 4.62424
sequence = GCGGAACACTTGTAAGCT

Gene: Shal_0063: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Shewanella piezotolerans WP3

Site:
position = -121
score = 4.62424
sequence = GCGGAACACTTGTAAGCT

Gene: swp_0114: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Shewanella sediminis HAW-EB3

Site:
position = -34
score = 4.83634
sequence = GAGGAACACCTGTACGCT

Gene: Ssed_4459: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Shewanella woodyi ATCC 51908

Site:
position = -34
score = 5.02777
sequence = GAGGTACACCTGTACGCT

Gene: Swoo_4860: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
 
CRON 6.
fadL
*
Shewanella oneidensis MR-1

Site:
position = -311
score = 6.2022
sequence = GGCGTACAGGTGTACGCT

Gene: SO_3099: Long-chain fatty acid transport protein
*
Shewanella putrefaciens CN-32

Site:
position = -303
score = 6.41738
sequence = AGCGTACACTTGTACGCT

Gene: Sputcn32_2470: Long-chain fatty acid transport protein
*
Shewanella sp W3-18-1

Site:
position = -303
score = 6.41738
sequence = AGCGTACACTTGTACGCT

Gene: Sputw3181_1538: Long-chain fatty acid transport protein
*
Shewanella sp ANA-3

Site:
position = -311
score = 6.41738
sequence = AGCGTACAAGTGTACGCT

Gene: Shewana3_1450: Long-chain fatty acid transport protein
*
Shewanella sp MR-4

Site:
position = -311
score = 6.38028
sequence = AGCGTACATGTGTACGCT

Gene: Shewmr4_1397: Long-chain fatty acid transport protein
*
Shewanella sp MR-7

Site:
position = -311
score = 6.38028
sequence = AGCGTACATGTGTACGCT

Gene: Shewmr7_1462: Long-chain fatty acid transport protein
*
Shewanella baltica OS155

Site:
position = -327
score = 5.31994
sequence = AGCGCACACTTGTGCGCT

Gene: Sbal_2771: Long-chain fatty acid transport protein
 
Shewanella denitrificans OS217

Gene: Sden_1414: Long-chain fatty acid transport protein
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2687: Long-chain fatty acid transport protein
*
Shewanella amazonensis SB2B

Site:
position = -297
score = 6.38028
sequence = AGCGTACACATGTACGCT

Gene: Sama_2178: Long-chain fatty acid transport protein
*
Shewanella loihica PV-4

Site:
position = -333
score = 6.41738
sequence = AGCGTACAAGTGTACGCT

Gene: Shew_2436: Long-chain fatty acid transport protein
*
Shewanella pealeana ATCC 700345

Site:
position = -319
score = 6.41738
sequence = AGCGTACACTTGTACGCT

Gene: Spea_2609: Long-chain fatty acid transport protein
*
Shewanella halifaxensis HAW-EB4

Site:
position = -241
score = 6.18023
sequence = AGCGTACATTTGTACGCT

Gene: Shal_2681: Long-chain fatty acid transport protein
*
Shewanella piezotolerans WP3

Site:
position = -316
score = 6.29404
sequence = AGCGTACATCTGTACGCT

Gene: swp_3153: Long-chain fatty acid transport protein
*
Shewanella sediminis HAW-EB3

Site:
position = -327
score = 6.61743
sequence = AGCGTACACGTGTACGCT

Gene: Ssed_1618: Long-chain fatty acid transport protein
*
Shewanella woodyi ATCC 51908

Site:
position = -318
score = 5.31665
sequence = AGCTTACAACTGTACACC

Gene: Swoo_3037: Long-chain fatty acid transport protein
Long-chain fatty acid transport protein
 
CRON 7.
plsC
*
Shewanella oneidensis MR-1

Site:
position = -80
score = 4.93844
sequence = AGCTTACAGATGTAAACA

Gene: SO_0567: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
*
Shewanella putrefaciens CN-32

Site:
position = -38
score = 4.60944
sequence = GGCTTACAGATGTAAACA

Gene: Sputcn32_3308: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
*
Shewanella sp W3-18-1

Site:
position = -38
score = 4.60944
sequence = GGCTTACAGATGTAAACA

Gene: Sputw3181_0633: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
*
Shewanella sp ANA-3

Site:
position = -41
score = 4.93844
sequence = AGCTTACAGATGTAAACA

Gene: Shewana3_0568: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
*
Shewanella sp MR-4

Site:
position = -41
score = 4.93844
sequence = AGCTTACAGATGTAAACA

Gene: Shewmr4_0569: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
*
Shewanella sp MR-7

Site:
position = -41
score = 4.93844
sequence = AGCTTACAGATGTAAACA

Gene: Shewmr7_3461: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
*
Shewanella baltica OS155

Site:
position = -80
score = 4.93844
sequence = AGCTTACAGATGTAAACA

Gene: Sbal_0529: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
*
Shewanella denitrificans OS217

Site:
position = -80
score = 4.88581
sequence = AGCGTACATATGTAAACA

Gene: Sden_0530: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
*
Shewanella frigidimarina NCIMB 400

Site:
position = -80
score = 4.88581
sequence = AGCGTACATATGTAAACA

Gene: Sfri_3514: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
*
Shewanella amazonensis SB2B

Site:
position = -80
score = 4.81139
sequence = AGCGCACACGTGTAAACA

Gene: Sama_3139: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
 
Shewanella loihica PV-4

Gene: Shew_0450: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
*
Shewanella pealeana ATCC 700345

Site:
position = -104
score = 4.82301
sequence = AGGCTACACGTGTAAACT

Gene: Spea_3713: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -104
score = 4.82301
sequence = AGGCTACACGTGTAAACT

Gene: Shal_3798: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
*
Shewanella piezotolerans WP3

Site:
position = -116
score = 4.58586
sequence = AGGCTACATGTGTAAACT

Gene: swp_0559: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_0619: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_4331: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
rraB
 
Shewanella oneidensis MR-1

Gene: SO_0568: Ribonuclease E inhibitor RraB
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_3307: Ribonuclease E inhibitor RraB
 
Shewanella sp W3-18-1

Gene: Sputw3181_0634: Ribonuclease E inhibitor RraB
 2
Shewanella sp ANA-3

Gene: Shewana3_2238: Ribonuclease E inhibitor RraB

Gene: Shewana3_0569: Ribonuclease E inhibitor RraB
 
Shewanella sp MR-4

Gene: Shewmr4_0570: Ribonuclease E inhibitor RraB
 
Shewanella sp MR-7

Gene: Shewmr7_3460: Ribonuclease E inhibitor RraB
 
Shewanella baltica OS155

Gene: Sbal_0530: Ribonuclease E inhibitor RraB
 
Shewanella denitrificans OS217

Gene: Sden_0531: Ribonuclease E inhibitor RraB
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_3513: Ribonuclease E inhibitor RraB
 
Shewanella amazonensis SB2B

Gene: Sama_3138: Ribonuclease E inhibitor RraB
 
Shewanella loihica PV-4

Gene: Shew_0451: Ribonuclease E inhibitor RraB
 
Shewanella pealeana ATCC 700345

Gene: Spea_3712: Ribonuclease E inhibitor RraB
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_3797: Ribonuclease E inhibitor RraB
 
Shewanella piezotolerans WP3

Gene: swp_0560: Ribonuclease E inhibitor RraB
 
Shewanella sediminis HAW-EB3

Gene: Ssed_0620: Ribonuclease E inhibitor RraB
 
Shewanella woodyi ATCC 51908

Gene: Swoo_4330: Ribonuclease E inhibitor RraB
Ribonuclease E inhibitor RraB
 
CRON 8.
fadE3
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
*
Shewanella loihica PV-4

Site:
position = -156
score = 5.73189
sequence = AGCGTACACTTGTAACCT

Gene: Shew_3003: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Shewanella pealeana ATCC 700345

Site:
position = -167
score = 5.93194
sequence = AGCGTACACGCGTAAGCT

Gene: Spea_1234: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -166
score = 5.75947
sequence = AGCGTACAGCCGTAAGCT

Gene: Shal_1266: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Shewanella piezotolerans WP3

Site:
position = -155
score = 5.25849
sequence = AGAGTACAGGCGTAAGCT

Gene: swp_3422: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Shewanella sediminis HAW-EB3
*
Shewanella woodyi ATCC 51908

Site:
position = -167
score = 6.10392
sequence = AGCGTACAGGTGTAAGCC

Gene: Swoo_1504: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
CRON 9.
pfaR
 
Shewanella oneidensis MR-1

Gene: SO_1603: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1327: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR
 
Shewanella sp W3-18-1

Gene: Sputw3181_2776: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR
 
Shewanella sp ANA-3

Gene: Shewana3_2839: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR
 
Shewanella sp MR-4

Gene: Shewmr4_2665: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR
 
Shewanella sp MR-7

Gene: Shewmr7_2732: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR
 
Shewanella baltica OS155

Gene: Sbal_1426: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR
 
Shewanella denitrificans OS217

Gene: Sden_2626: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1222: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR
 
Shewanella amazonensis SB2B

Gene: Sama_1116: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR
*
Shewanella loihica PV-4

Site:
position = -194
score = 5.85342
sequence = AGCGAACATATGTAAGCT

Gene: Shew_2664: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR
*
Shewanella pealeana ATCC 700345

Site:
position = -207
score = 5.54045
sequence = AGCTTACAAGTGTTCACT

Gene: Spea_2906: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR
*
Shewanella halifaxensis HAW-EB4

Site:
position = -205
score = 5.21146
sequence = AGCTTACAAGTGTTCACC

Gene: Shal_3007: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR
*
Shewanella piezotolerans WP3

Site:
position = -207
score = 5.41712
sequence = AGCTTACATCTGTTCACT

Gene: swp_3549: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR
*
Shewanella sediminis HAW-EB3

Site:
position = -206
score = 5.73189
sequence = AGAGTACAAGTGTAAGCT

Gene: Ssed_3201: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR
*
Shewanella woodyi ATCC 51908

Site:
position = -205
score = 4.63158
sequence = AATAAACACGTGTAAGCT

Gene: Swoo_1424: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR
transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR
pfaA
 
Shewanella oneidensis MR-1

Gene: SO_1602: omega-3 polyunsaturated fatty acid synthase subunit, PfaA
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1326: omega-3 polyunsaturated fatty acid synthase subunit, PfaA
 
Shewanella sp W3-18-1

Gene: Sputw3181_2777: omega-3 polyunsaturated fatty acid synthase subunit, PfaA
 
Shewanella sp ANA-3

Gene: Shewana3_2840: omega-3 polyunsaturated fatty acid synthase subunit, PfaA
 
Shewanella sp MR-4

Gene: Shewmr4_2666: omega-3 polyunsaturated fatty acid synthase subunit, PfaA
 
Shewanella sp MR-7

Gene: Shewmr7_2733: omega-3 polyunsaturated fatty acid synthase subunit, PfaA
 
Shewanella baltica OS155

Gene: Sbal_1425: omega-3 polyunsaturated fatty acid synthase subunit, PfaA
 
Shewanella denitrificans OS217

Gene: Sden_2627: omega-3 polyunsaturated fatty acid synthase subunit, PfaA
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1221: omega-3 polyunsaturated fatty acid synthase subunit, PfaA
 
Shewanella amazonensis SB2B

Gene: Sama_1115: omega-3 polyunsaturated fatty acid synthase subunit, PfaA
 
Shewanella loihica PV-4

Gene: Shew_2665: omega-3 polyunsaturated fatty acid synthase subunit, PfaA
 
Shewanella pealeana ATCC 700345

Gene: Spea_2907: omega-3 polyunsaturated fatty acid synthase subunit, PfaA
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_3008: omega-3 polyunsaturated fatty acid synthase subunit, PfaA
 
Shewanella piezotolerans WP3

Gene: swp_3550: omega-3 polyunsaturated fatty acid synthase subunit, PfaA
 
Shewanella sediminis HAW-EB3

Gene: Ssed_3202: omega-3 polyunsaturated fatty acid synthase subunit, PfaA
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1423: omega-3 polyunsaturated fatty acid synthase subunit, PfaA
omega-3 polyunsaturated fatty acid synthase subunit, PfaA
pfaB
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1325: omega-3 polyunsaturated fatty acid synthase subunit, PfaB
 
Shewanella sp W3-18-1

Gene: Sputw3181_2778: omega-3 polyunsaturated fatty acid synthase subunit, PfaB
 
Shewanella sp ANA-3

Gene: Shewana3_2841: omega-3 polyunsaturated fatty acid synthase subunit, PfaB
 
Shewanella sp MR-4

Gene: Shewmr4_2667: omega-3 polyunsaturated fatty acid synthase subunit, PfaB
 
Shewanella sp MR-7

Gene: Shewmr7_2734: omega-3 polyunsaturated fatty acid synthase subunit, PfaB
 
Shewanella baltica OS155

Gene: Sbal_1424: omega-3 polyunsaturated fatty acid synthase subunit, PfaB
 
Shewanella denitrificans OS217

Gene: Sden_2628: omega-3 polyunsaturated fatty acid synthase subunit, PfaB
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1220: omega-3 polyunsaturated fatty acid synthase subunit, PfaB
 
Shewanella amazonensis SB2B

Gene: Sama_1114: omega-3 polyunsaturated fatty acid synthase subunit, PfaB
 
Shewanella loihica PV-4

Gene: Shew_2666: omega-3 polyunsaturated fatty acid synthase subunit, PfaB
 
Shewanella pealeana ATCC 700345

Gene: Spea_2908: omega-3 polyunsaturated fatty acid synthase subunit, PfaB
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_3009: omega-3 polyunsaturated fatty acid synthase subunit, PfaB
 
Shewanella piezotolerans WP3

Gene: swp_3551: omega-3 polyunsaturated fatty acid synthase subunit, PfaB
 
Shewanella sediminis HAW-EB3

Gene: Ssed_3203: omega-3 polyunsaturated fatty acid synthase subunit, PfaB
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1422: omega-3 polyunsaturated fatty acid synthase subunit, PfaB
omega-3 polyunsaturated fatty acid synthase subunit, PfaB
pfaC
 
Shewanella oneidensis MR-1

Gene: SO_1599: omega-3 polyunsaturated fatty acid synthase subunit, PfaC
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1324: omega-3 polyunsaturated fatty acid synthase subunit, PfaC
 
Shewanella sp W3-18-1

Gene: Sputw3181_2779: omega-3 polyunsaturated fatty acid synthase subunit, PfaC
 
Shewanella sp ANA-3

Gene: Shewana3_2842: omega-3 polyunsaturated fatty acid synthase subunit, PfaC
 
Shewanella sp MR-4

Gene: Shewmr4_2668: omega-3 polyunsaturated fatty acid synthase subunit, PfaC
 
Shewanella sp MR-7

Gene: Shewmr7_2735: omega-3 polyunsaturated fatty acid synthase subunit, PfaC
 
Shewanella baltica OS155

Gene: Sbal_1423: omega-3 polyunsaturated fatty acid synthase subunit, PfaC
 
Shewanella denitrificans OS217

Gene: Sden_2629: omega-3 polyunsaturated fatty acid synthase subunit, PfaC
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1219: omega-3 polyunsaturated fatty acid synthase subunit, PfaC
 
Shewanella amazonensis SB2B

Gene: Sama_1113: omega-3 polyunsaturated fatty acid synthase subunit, PfaC
 
Shewanella loihica PV-4

Gene: Shew_2667: omega-3 polyunsaturated fatty acid synthase subunit, PfaC
 
Shewanella pealeana ATCC 700345

Gene: Spea_2909: omega-3 polyunsaturated fatty acid synthase subunit, PfaC
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_3010: omega-3 polyunsaturated fatty acid synthase subunit, PfaC
 
Shewanella piezotolerans WP3

Gene: swp_3553: omega-3 polyunsaturated fatty acid synthase subunit, PfaC
 
Shewanella sediminis HAW-EB3

Gene: Ssed_3204: omega-3 polyunsaturated fatty acid synthase subunit, PfaC
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1421: omega-3 polyunsaturated fatty acid synthase subunit, PfaC
omega-3 polyunsaturated fatty acid synthase subunit, PfaC
pfaD
 
Shewanella oneidensis MR-1

Gene: SO_1597: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1323: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
 
Shewanella sp W3-18-1

Gene: Sputw3181_2780: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
 
Shewanella sp ANA-3

Gene: Shewana3_2843: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
 
Shewanella sp MR-4

Gene: Shewmr4_2669: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
 
Shewanella sp MR-7

Gene: Shewmr7_2736: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
 
Shewanella baltica OS155

Gene: Sbal_1422: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
 
Shewanella denitrificans OS217

Gene: Sden_2630: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1218: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
 
Shewanella amazonensis SB2B

Gene: Sama_1112: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
 
Shewanella loihica PV-4

Gene: Shew_2668: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
 
Shewanella pealeana ATCC 700345

Gene: Spea_2910: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_3011: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
 
Shewanella piezotolerans WP3

Gene: swp_3554: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
 
Shewanella sediminis HAW-EB3

Gene: Ssed_3205: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1420: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD