Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog HpxS - Oceanospirillales/Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Allantoin utilization
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 14 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Alcanivorax borkumensis SK2
Chromohalobacter salexigens DSM 3043 6 3
Hahella chejuensis KCTC 2396
Marinomonas sp. MWYL1 3 1
Oceanobacter sp. RED65
Oceanospirillum sp. MED92
Reinekea sp. MED297
Saccharophagus degradans 2-40
Marinobacter aqueolei
Marinobacter sp. ELB17 5 3
Teredinibacter turnerae T7901
Cellvibrio japonicus Ueda107
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
hpxS
 
Alcanivorax borkumensis SK2
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_0069: Transcriptional regulator for allantoin utilization, GntR family
 
Hahella chejuensis KCTC 2396
*
Marinomonas sp. MWYL1

Site:
position = -116
score = 4.22712
sequence = TATTGTGCACAATT

Site:
position = -29
score = 4.15775
sequence = CATCGTATACAATT

Site:
position = -252
score = 4.41863
sequence = AATTGTATACAATG

Gene: Mmwyl1_0471: Transcriptional regulator for allantoin utilization, GntR family
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Saccharophagus degradans 2-40
 
Marinobacter aqueolei
*
Marinobacter sp. ELB17

Site:
position = -51
score = 5.17527
sequence = TTTCGTATACAATA

Gene: MELB17_16768: Transcriptional regulator for allantoin utilization, GntR family
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
Transcriptional regulator for allantoin utilization, GntR family
hyuE
 
Alcanivorax borkumensis SK2
*
Chromohalobacter salexigens DSM 3043

Site:
position = -220
score = 4.84503
sequence = TGATGTATACAAAA

Site:
position = -71
score = 4.88391
sequence = TTTTGTATTCAATA

Site:
position = -50
score = 4.94602
sequence = TTTTGTAGACAAAA

Gene: Csal_0077: Hydantoin racemase (EC 5.1.99.-)
 
Hahella chejuensis KCTC 2396
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_0470: Hydantoin racemase (EC 5.1.99.-)
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Saccharophagus degradans 2-40
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
Hydantoin racemase (EC 5.1.99.-)
hpxB
 
Alcanivorax borkumensis SK2
*
Chromohalobacter salexigens DSM 3043

Site:
position = -212
score = 4.88391
sequence = TATTGAATACAAAA

Site:
position = -63
score = 4.84503
sequence = TTTTGTATACATCA

Site:
position = -233
score = 4.94602
sequence = TTTTGTCTACAAAA

Gene: Csal_0078: Allantoinase, urate catabolism protein
 
Hahella chejuensis KCTC 2396
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_0469: Allantoinase, urate catabolism protein
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Saccharophagus degradans 2-40
 
Marinobacter aqueolei
*
Marinobacter sp. ELB17

Site:
position = -80
score = 4.99858
sequence = TATTGTGTACAAAA

Site:
position = -261
score = 4.15391
sequence = AATTGTACACGTTA

Gene: MELB17_16758: Allantoinase, urate catabolism protein
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
Allantoinase, urate catabolism protein
COG3257
 
Alcanivorax borkumensis SK2
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_0079: putative allantoin-urate catabolism protein
 
Hahella chejuensis KCTC 2396
 
Marinomonas sp. MWYL1
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Saccharophagus degradans 2-40
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17

Gene: MELB17_16753: putative allantoin-urate catabolism protein
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
putative allantoin-urate catabolism protein
COG3194
 
Alcanivorax borkumensis SK2
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_0080: Ureidoglycolate hydrolase (EC 3.5.3.19)
 
Hahella chejuensis KCTC 2396
 
Marinomonas sp. MWYL1
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Saccharophagus degradans 2-40
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17

Gene: MELB17_16748: Ureidoglycolate hydrolase (EC 3.5.3.19)
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
Ureidoglycolate hydrolase (EC 3.5.3.19)
COG2351
 
Alcanivorax borkumensis SK2
*
Chromohalobacter salexigens DSM 3043

Site:
position = -92
score = 5.09493
sequence = TGTTGTATACAAAA

Gene: Csal_0068: Transthyretin
 
Hahella chejuensis KCTC 2396
 
Marinomonas sp. MWYL1
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Saccharophagus degradans 2-40
 
Marinobacter aqueolei
*
Marinobacter sp. ELB17

Site:
position = -107
score = 4.85237
sequence = AAATGTATACAATA

Gene: MELB17_16778: Transthyretin
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
Transthyretin
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD