Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Dnr - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Denitrification
Effector: Nitric oxide
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1
Shewanella putrefaciens CN-32
Shewanella sp W3-18-1
Shewanella sp ANA-3
Shewanella sp MR-4
Shewanella sp MR-7
Shewanella baltica OS155
Shewanella denitrificans OS217 10 2
Shewanella frigidimarina NCIMB 400
Shewanella amazonensis SB2B 5 1
Shewanella loihica PV-4 11 2
Shewanella pealeana ATCC 700345
Shewanella halifaxensis HAW-EB4
Shewanella piezotolerans WP3
Shewanella sediminis HAW-EB3
Shewanella woodyi ATCC 51908
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nirK
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
*
Shewanella denitrificans OS217

Site:
position = -121
score = 6.07777
sequence = ACTTGATCTAGGTCAATT

Gene: Sden_3482: Copper-containing nitrite reductase (EC 1.7.2.1)
 
Shewanella frigidimarina NCIMB 400
*
Shewanella amazonensis SB2B

Site:
position = -133
score = 5.25178
sequence = AGTTGACTTCCATCAATT

Gene: Sama_2681: Copper-containing nitrite reductase (EC 1.7.2.1)
*
Shewanella loihica PV-4

Site:
position = -131
score = 5.7771
sequence = ACTTGACCAAAGTCAATT

Gene: Shew_3335: Copper-containing nitrite reductase (EC 1.7.2.1)
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Copper-containing nitrite reductase (EC 1.7.2.1)
Sden_3481
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217

Gene: Sden_3481: hypothetical protein
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B

Gene: Sama_2682: hypothetical protein
 
Shewanella loihica PV-4

Gene: Shew_3334: hypothetical protein
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
hypothetical protein
sco
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217

Gene: Sden_3480: Putative copper metallochaperone, Sco1/SenC/PrrC family
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B

Gene: Sama_2683: Putative copper metallochaperone, Sco1/SenC/PrrC family
 
Shewanella loihica PV-4

Gene: Shew_3333: Putative copper metallochaperone, Sco1/SenC/PrrC family
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Putative copper metallochaperone, Sco1/SenC/PrrC family
cox
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217

Gene: Sden_3479: Copper metallochaperone, bacterial analog of Cox17 protein
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B

Gene: Sama_2684: Copper metallochaperone, bacterial analog of Cox17 protein
 
Shewanella loihica PV-4

Gene: Shew_3332: Copper metallochaperone, bacterial analog of Cox17 protein
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Copper metallochaperone, bacterial analog of Cox17 protein
Dnr
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217

Gene: Sden_3444: Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family)
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B

Gene: Sama_2685: Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family)
 
Shewanella loihica PV-4

Gene: Shew_3331: Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family)
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family)
 
CRON 2.
nosR
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
*
Shewanella denitrificans OS217

Site:
position = -85
score = 5.16531
sequence = TATTGATCTAAGTCACTA

Gene: Sden_2220: Nitrous oxide reductase maturation protein NosR
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
*
Shewanella loihica PV-4

Site:
position = -100
score = 5.08202
sequence = ATTTGATCTCAGTCACGT

Gene: Shew_3399: Nitrous oxide reductase maturation protein NosR
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Nitrous oxide reductase maturation protein NosR
nosZ
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217

Gene: Sden_2219: Nitrous-oxide reductase (EC 1.7.99.6)
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4

Gene: Shew_3400: Nitrous-oxide reductase (EC 1.7.99.6)
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Nitrous-oxide reductase (EC 1.7.99.6)
nosD
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217

Gene: Sden_2218: Nitrous oxide reductase maturation protein NosD
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4

Gene: Shew_3401: Nitrous oxide reductase maturation protein NosD
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Nitrous oxide reductase maturation protein NosD
nosF
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217

Gene: Sden_2217: Nitrous oxide reductase maturation protein NosF (ATPase)
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4

Gene: Shew_3402: Nitrous oxide reductase maturation protein NosF (ATPase)
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Nitrous oxide reductase maturation protein NosF (ATPase)
nosY
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217

Gene: Sden_2216: Nitrous oxide reductase maturation transmembrane protein NosY
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4

Gene: Shew_3403: Nitrous oxide reductase maturation transmembrane protein NosY
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Nitrous oxide reductase maturation transmembrane protein NosY
nosL
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217

Gene: Sden_2215: Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4

Gene: Shew_3404: Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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