Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Amir_6997 - Frankineae/Propionibacterineae/Pseudonocardiaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process:
Effector:
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 9 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Actinosynnema mirum DSM 43827 7 4
Saccharomonospora viridis DSM 43017
Saccharopolyspora erythraea NRRL 2338 6 2
Acidothermus cellulolyticus 11B
Frankia sp. CcI3
Frankia sp. EAN1pec
Nakamurella multipartita DSM 44233 4 2
Nocardioides sp. JS614 1 1
Propionibacterium acnes KPA171202
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG1914
 
Actinosynnema mirum DSM 43827
 
Saccharomonospora viridis DSM 43017
*
Saccharopolyspora erythraea NRRL 2338

Site:
position = -94
score = 5.54644
sequence = GATTGTTCAACAATT

Gene: SACE_1549: Mn2+ and Fe2+ transporters of the NRAMP family
 
Acidothermus cellulolyticus 11B
 
Frankia sp. CcI3
 
Frankia sp. EAN1pec
 
Nakamurella multipartita DSM 44233
 
Nocardioides sp. JS614
 
Propionibacterium acnes KPA171202
Mn2+ and Fe2+ transporters of the NRAMP family
COG1540
 
Actinosynnema mirum DSM 43827

Gene: Amir_5927: Uncharacterized proteins, homologs of lactam utilization protein B
 
Saccharomonospora viridis DSM 43017

Gene: Svir_09670: Uncharacterized proteins, homologs of lactam utilization protein B
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_1550: Uncharacterized proteins, homologs of lactam utilization protein B
 
Acidothermus cellulolyticus 11B

Gene: Acel_0592: Uncharacterized proteins, homologs of lactam utilization protein B
 
Frankia sp. CcI3

Gene: Francci3_2973: Uncharacterized proteins, homologs of lactam utilization protein B
 
Frankia sp. EAN1pec
 
Nakamurella multipartita DSM 44233
 
Nocardioides sp. JS614

Gene: Noca_2978: Uncharacterized proteins, homologs of lactam utilization protein B
 
Propionibacterium acnes KPA171202

Gene: PPA0282: Uncharacterized proteins, homologs of lactam utilization protein B
Uncharacterized proteins, homologs of lactam utilization protein B
alhA
*
Actinosynnema mirum DSM 43827

Site:
position = -58
score = 5.5337
sequence = GGTTGTTGAACAATC

Gene: Amir_6832: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
 
Saccharomonospora viridis DSM 43017
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_1551: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
 
Acidothermus cellulolyticus 11B

Gene: Acel_0593: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
 
Frankia sp. CcI3

Gene: Francci3_2974: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
 
Frankia sp. EAN1pec
*
Nakamurella multipartita DSM 44233

Site:
position = -819
score = 5.54644
sequence = GATTGTTCAACAATT

Gene: Namu_4801: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
 
Nocardioides sp. JS614

Gene: Noca_2977: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
 
Propionibacterium acnes KPA171202

Gene: PPA0283: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
alhB
 
Actinosynnema mirum DSM 43827

Gene: Amir_6834: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)
 
Saccharomonospora viridis DSM 43017

Gene: Svir_06210: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_1552: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)
 
Acidothermus cellulolyticus 11B

Gene: Acel_0594: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)
 
Frankia sp. CcI3

Gene: Francci3_2975: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)
 
Frankia sp. EAN1pec
 
Nakamurella multipartita DSM 44233

Gene: Namu_4802: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)
 2
Nocardioides sp. JS614

Gene: Noca_2976: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)

Gene: Noca_0092: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)
 
Propionibacterium acnes KPA171202

Gene: PPA0284: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)
Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)
COG4336
 
Actinosynnema mirum DSM 43827

Gene: Amir_5735: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase
 
Saccharomonospora viridis DSM 43017
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_1553: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase
 
Acidothermus cellulolyticus 11B
 
Frankia sp. CcI3
 
Frankia sp. EAN1pec
 
Nakamurella multipartita DSM 44233
 
Nocardioides sp. JS614

Gene: Noca_0093: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase
 
Propionibacterium acnes KPA171202
hypothetical protein possibly connected to lactam utilization and allophanate hydrolase
Amir_6833
 
Actinosynnema mirum DSM 43827

Gene: Amir_6833: hypothetical protein
 
Saccharomonospora viridis DSM 43017
 
Saccharopolyspora erythraea NRRL 2338
 
Acidothermus cellulolyticus 11B
 
Frankia sp. CcI3
 
Frankia sp. EAN1pec
 
Nakamurella multipartita DSM 44233
 
Nocardioides sp. JS614
 
Propionibacterium acnes KPA171202
hypothetical protein
COG2814
*
Actinosynnema mirum DSM 43827

Site:
position = -61
score = 5.8149
sequence = GATTGTTCAACAATC

Gene: Amir_5734: Major facilitator superfamily transporter
 
Saccharomonospora viridis DSM 43017
 
Saccharopolyspora erythraea NRRL 2338
 
Acidothermus cellulolyticus 11B
 
Frankia sp. CcI3
 
Frankia sp. EAN1pec
 
Nakamurella multipartita DSM 44233

Gene: Namu_4803: Major facilitator superfamily transporter
 
Nocardioides sp. JS614
 
Propionibacterium acnes KPA171202
Major facilitator superfamily transporter
 
CRON 2.
Amir_6996
*
Actinosynnema mirum DSM 43827

Site:
position = -134
score = 5.5337
sequence = GATTGTTCAACAACC

Gene: Amir_6996: putative secreted protein
 
Saccharomonospora viridis DSM 43017
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_3321: putative secreted protein
 
Acidothermus cellulolyticus 11B
 
Frankia sp. CcI3
 
Frankia sp. EAN1pec
 
Nakamurella multipartita DSM 44233
 
Nocardioides sp. JS614
 
Propionibacterium acnes KPA171202
putative secreted protein
 
CRON 3.
Amir_6997
*
Actinosynnema mirum DSM 43827

Site:
position = -58
score = 5.5337
sequence = GGTTGTTGAACAATC

Gene: Amir_6997: Transcriptional regulator, GntR family
 
Saccharomonospora viridis DSM 43017
*
Saccharopolyspora erythraea NRRL 2338

Site:
position = -81
score = 5.54644
sequence = AATTGTTGAACAATC

Gene: SACE_1548: Transcriptional regulator, GntR family
 
Acidothermus cellulolyticus 11B
 
Frankia sp. CcI3
 
Frankia sp. EAN1pec
*
Nakamurella multipartita DSM 44233

Site:
position = -44
score = 5.54644
sequence = AATTGTTGAACAATC

Gene: Namu_4799: Transcriptional regulator, GntR family
*
Nocardioides sp. JS614

Site:
position = -16
score = 3.87254
sequence = GATCGTCGCGCAACT

Gene: Noca_0048: Transcriptional regulator, GntR family
 
Propionibacterium acnes KPA171202
Transcriptional regulator, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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