Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog DeoR - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nucleoside utilization
Effector:
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 9 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 2 1
Shewanella putrefaciens CN-32 2 1
Shewanella sp W3-18-1 2 1
Shewanella sp ANA-3 2 1
Shewanella sp MR-4
Shewanella sp MR-7
Shewanella baltica OS155
Shewanella denitrificans OS217
Shewanella frigidimarina NCIMB 400
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella pealeana ATCC 700345 2 1
Shewanella halifaxensis HAW-EB4 2 1
Shewanella piezotolerans WP3 2 1
Shewanella sediminis HAW-EB3 2 1
Shewanella woodyi ATCC 51908 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
deoD
*
Shewanella oneidensis MR-1

Site:
position = -73
score = 5.9955
sequence = TCCGGACTTTAGTCCTAA

Gene: SO_2719: Purine nucleoside phosphorylase (EC 2.4.2.1)
*
Shewanella putrefaciens CN-32

Site:
position = -73
score = 5.9955
sequence = TCCGGACTTTAGTCCTAA

Gene: Sputcn32_1657: Purine nucleoside phosphorylase (EC 2.4.2.1)
*
Shewanella sp W3-18-1

Site:
position = -73
score = 5.9955
sequence = TCCGGACTTTAGTCCTAA

Gene: Sputw3181_2368: Purine nucleoside phosphorylase (EC 2.4.2.1)
*
Shewanella sp ANA-3

Site:
position = -73
score = 5.77892
sequence = AGCGGACTTTAGTCCTAA

Gene: Shewana3_2503: Purine nucleoside phosphorylase (EC 2.4.2.1)
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
*
Shewanella pealeana ATCC 700345

Site:
position = -72
score = 5.53649
sequence = TGCGGACTTATGTCCTCT

Gene: Spea_3784: Purine nucleoside phosphorylase (EC 2.4.2.1)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -72
score = 5.4797
sequence = TGCGGACTAATGTCCTCT

Gene: Shal_3869: Purine nucleoside phosphorylase (EC 2.4.2.1)
*
Shewanella piezotolerans WP3

Site:
position = -72
score = 5.53649
sequence = TGCGGACTTATGTCCTCT

Gene: swp_0461: Purine nucleoside phosphorylase (EC 2.4.2.1)
*
Shewanella sediminis HAW-EB3

Site:
position = -93
score = 5.77892
sequence = TGCGGACTTTTGTCCTAA

Gene: Ssed_3271: Purine nucleoside phosphorylase (EC 2.4.2.1)
*
Shewanella woodyi ATCC 51908

Site:
position = -116
score = 5.34488
sequence = TGCGGACTTTTGTCCTTA

Gene: Swoo_3422: Purine nucleoside phosphorylase (EC 2.4.2.1)
Purine nucleoside phosphorylase (EC 2.4.2.1)
deoT
 
Shewanella oneidensis MR-1

Gene: SO_2718: Predicted purine nucleoside transporter, MFS superfamily
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1658: Predicted purine nucleoside transporter, MFS superfamily
 
Shewanella sp W3-18-1

Gene: Sputw3181_2367: Predicted purine nucleoside transporter, MFS superfamily
 
Shewanella sp ANA-3

Gene: Shewana3_2502: Predicted purine nucleoside transporter, MFS superfamily
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345

Gene: Spea_3785: Predicted purine nucleoside transporter, MFS superfamily
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_3870: Predicted purine nucleoside transporter, MFS superfamily
 
Shewanella piezotolerans WP3

Gene: swp_0460: Predicted purine nucleoside transporter, MFS superfamily
 
Shewanella sediminis HAW-EB3

Gene: Ssed_3272: Predicted purine nucleoside transporter, MFS superfamily
 
Shewanella woodyi ATCC 51908

Gene: Swoo_3423: Predicted purine nucleoside transporter, MFS superfamily
Predicted purine nucleoside transporter, MFS superfamily
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD