Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog MetR - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode:
Biological process: Methionine biosynthesis
Effector: Homocysteine
Phylum: Proteobacteria/beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 13 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42 2 2
Comamonas testosteroni KF-1 2 2
Delftia acidovorans SPH-1 1 1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110 2 2
Verminephrobacter eiseniae EF01-2 2 2
Methylibium petroleiphilum PM1
Leptothrix cholodnii SP-6
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
metR
 
Acidovorax avenae subsp. citrulli AAC00-1
*
Acidovorax sp. JS42

Site:
position = -13
score = 4.02823
sequence = TTGAATATTTCTAAT

Site:
position = -44
score = 3.36743
sequence = ATGATTCAAACGAAA

Gene: Ajs_1631: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Comamonas testosteroni KF-1

Site:
position = -17
score = 4.62421
sequence = ATGAATTGTGTTCAC

Gene: CtesDRAFT_5279: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Delftia acidovorans SPH-1

Site:
position = -19
score = 4.23049
sequence = ATGAATTTTTCTCAC

Gene: Daci_5860: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
*
Variovorax paradoxus S110

Site:
position = -13
score = 4.62421
sequence = TTGAAATTCATTCAT

Site:
position = -44
score = 3.36743
sequence = ATGATTCAAACGAAA

Gene: Vapar_3249: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Verminephrobacter eiseniae EF01-2

Site:
position = -13
score = 5.2472
sequence = TTGAATAGTATTCAT

Gene: Veis_4448: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
 
CRON 2.
metE
 
Acidovorax avenae subsp. citrulli AAC00-1
*
Acidovorax sp. JS42

Site:
position = -99
score = 4.02823
sequence = ATTAGAAATATTCAA

Site:
position = -68
score = 3.36743
sequence = TTTCGTTTGAATCAT

Gene: Ajs_1630: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
*
Comamonas testosteroni KF-1

Site:
position = -21
score = 4.62421
sequence = GTGAACACAATTCAT

Gene: CtesDRAFT_5278: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
*
Variovorax paradoxus S110

Site:
position = -103
score = 4.62421
sequence = ATGAATGAATTTCAA

Site:
position = -72
score = 3.36743
sequence = TTTCGTTTGAATCAT

Gene: Vapar_3248: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
*
Verminephrobacter eiseniae EF01-2

Site:
position = -72
score = 5.2472
sequence = ATGAATACTATTCAA

Gene: Veis_4447: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD