Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog MetR - Xanthomonadales

Properties
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: repressor
Biological process: Methionine biosynthesis
Effector: Homocysteine
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Xylella fastidiosa 9a5c
Xanthomonas axonopodis pv. citri str. 306 6 2
Xanthomonas campestris pv. campestris str. ATCC 33913 5 2
Stenotrophomonas maltophilia K279a 5 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
metR
 
Xylella fastidiosa 9a5c
*
Xanthomonas axonopodis pv. citri str. 306

Site:
position = -19
score = 5.43369
sequence = ATGAATTCGGATCAT

Gene: XAC0333: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Xanthomonas campestris pv. campestris str. ATCC 33913

Site:
position = -19
score = 5.43369
sequence = ATGAATTCGGATCAT

Gene: XCC0315: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Stenotrophomonas maltophilia K279a

Site:
position = -19
score = 4.95353
sequence = ATGAGCAGGATTCAT

Gene: Smlt2583: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
PF02677
 
Xylella fastidiosa 9a5c

Gene: XF2273: Protein of unknown function DUF208
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC0332: Protein of unknown function DUF208
 
Xanthomonas campestris pv. campestris str. ATCC 33913
 
Stenotrophomonas maltophilia K279a

Gene: Smlt0258: Protein of unknown function DUF208
Protein of unknown function DUF208
metF
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC0331: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC0314: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Stenotrophomonas maltophilia K279a

Gene: Smlt2582: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
CRON 2.
PF03358
 
Xylella fastidiosa 9a5c
*
Xanthomonas axonopodis pv. citri str. 306

Site:
position = -186
score = 5.43369
sequence = ATGATCCGAATTCAT

Gene: XAC0334: NADPH-dependent FMN reductase
*
Xanthomonas campestris pv. campestris str. ATCC 33913

Site:
position = -105
score = 5.43369
sequence = ATGATCCGAATTCAT

Gene: XCC0316: NADPH-dependent FMN reductase
*
Stenotrophomonas maltophilia K279a

Site:
position = -71
score = 4.95353
sequence = ATGAATCCTGCTCAT

Gene: Smlt2584: NADPH-dependent FMN reductase
NADPH-dependent FMN reductase
PF08908
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC0335: Protein of unknown function DUF1852
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC0317: Protein of unknown function DUF1852
 
Stenotrophomonas maltophilia K279a

Gene: Smlt2585: Protein of unknown function DUF1852
Protein of unknown function DUF1852
metE
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC0336: 5-methyltetrahydropteroyltriglutamate--homocy5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)ent isozyme) (cobalamin-independent methionine synthase)
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC0318: 5-methyltetrahydropteroyltriglutamate--homocy5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)ent isozyme) (cobalamin-independent methionine synthase)
 
Stenotrophomonas maltophilia K279a

Gene: Smlt2586: 5-methyltetrahydropteroyltriglutamate--homocy5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)ent isozyme) (cobalamin-independent methionine synthase)
5-methyltetrahydropteroyltriglutamate--homocy5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)ent isozyme) (cobalamin-independent methionine synthase)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD