Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog MetR - Vibrionales

Properties
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: repressor (activator)
Biological process: Methionine biosynthesis
Effector: Homocysteine
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 57 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Vibrio cholerae O1 biovar eltor str. N16961 5 4
Vibrio vulnificus CMCP6 6 5
Vibrio harveyi ATCC BAA-1116 7 6
Vibrio parahaemolyticus RIMD 2210633 7 5
Vibrio shilonii AK1 4 4
Vibrio splendidus LGP32 5 4
Vibrio fischeri ES114 5 5
Vibrio salmonicida LFI1238 3 3
Vibrio angustum S14 4 3
Photobacterium profundum SS9 4 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
VC1705
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -121
score = 4.31882
sequence = ATTAGTAATTTTCAT

Gene: VC1705: hypothetical protein
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9
hypothetical protein
metR
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC1706: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Vibrio vulnificus CMCP6

Site:
position = -128
score = 4.3048
sequence = ATTAGAAAAATTCAT

Gene: VV1_2218: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -133
score = 4.8723
sequence = ATTAAAAAATTTCAT

Gene: VIBHAR_02773: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP1976: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Vibrio shilonii AK1

Site:
position = -109
score = 5.05544
sequence = ATGAAATTAATTCAA

Gene: VSAK1_00947: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Vibrio splendidus LGP32

Site:
position = -141
score = 4.84065
sequence = ATTAATAATTTTCAT

Gene: VS_1144: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Vibrio fischeri ES114

Site:
position = -136
score = 5.02379
sequence = ATGAATTATATTCAA

Site:
position = -101
score = 4.05567
sequence = ATCGATTAACTTCAT

Gene: VF_1722: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Vibrio salmonicida LFI1238

Site:
position = -136
score = 5.05544
sequence = ATGAATTTATTTCAA

Site:
position = -65
score = 4.16221
sequence = TTGAAGGTTTTTCAC

Gene: VSAL_I0860: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
 
Vibrio angustum S14

Gene: VAS14_04738: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Photobacterium profundum SS9

Site:
position = -163
score = 4.25913
sequence = ATGAATAAAACTAAT

Site:
position = -43
score = 4.82663
sequence = ATTAAATATATTCAT

Gene: PBPRA1378: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
VP1975
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -118
score = 4.82663
sequence = ATTAAAAAAATTCAT

Gene: VP1975: hypothetical protein
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9
hypothetical protein
 
CRON 2.
metE
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -147
score = 4.31882
sequence = ATGAAAATTACTAAT

Gene: VC1704: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
*
Vibrio vulnificus CMCP6

Site:
position = -208
score = 4.3048
sequence = ATGAATTTTTCTAAT

Gene: VV1_2219: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -146
score = 4.8723
sequence = ATGAAATTTTTTAAT

Gene: VIBHAR_02772: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -149
score = 4.82663
sequence = ATGAATTTTTTTAAT

Gene: VP1974: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
*
Vibrio shilonii AK1

Site:
position = -199
score = 4.69257
sequence = ATGAATATCCCTCAT

Site:
position = -103
score = 5.05544
sequence = TTGAATTAATTTCAT

Gene: VSAK1_00952: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
*
Vibrio splendidus LGP32

Site:
position = -155
score = 4.84065
sequence = ATGAAAATTATTAAT

Gene: VS_1145: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
*
Vibrio fischeri ES114

Site:
position = -134
score = 4.05567
sequence = ATGAAGTTAATCGAT

Site:
position = -99
score = 5.02379
sequence = TTGAATATAATTCAT

Gene: VF_1721: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
*
Photobacterium profundum SS9

Site:
position = -226
score = 4.82663
sequence = ATGAATATATTTAAT

Site:
position = -106
score = 4.25913
sequence = ATTAGTTTTATTCAT

Gene: PBPRA1379: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
 
CRON 3.
pfl
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -116
score = 4.76854
sequence = ATGAAAAGCATTCAT

Site:
position = -138
score = 4.51245
sequence = ATGCAATTTAATCAT

Gene: VIBHAR_02963: Pyruvate formate-lyase (EC 2.3.1.54)
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
*
Vibrio fischeri ES114

Site:
position = -173
score = 4.81689
sequence = ATGCATATAATGCAT

Site:
position = -151
score = 4.76854
sequence = ATGAAAAGCATTCAT

Gene: VF_A0142: Pyruvate formate-lyase (EC 2.3.1.54)
 
Vibrio salmonicida LFI1238
*
Vibrio angustum S14

Site:
position = -226
score = 4.76854
sequence = ATGAAAACCATTCAT

Site:
position = -248
score = 4.35
sequence = ATGCACAATATGCAT

Gene: VAS14_11629: Pyruvate formate-lyase (EC 2.3.1.54)
 
Photobacterium profundum SS9
Pyruvate formate-lyase (EC 2.3.1.54)
 
CRON 4.
PF08908
 
Vibrio cholerae O1 biovar eltor str. N16961
*
Vibrio vulnificus CMCP6

Site:
position = -97
score = 5.20038
sequence = ATGAATTTCCTTCAT

Gene: VV20997: Protein of unknown function DUF1852
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -236
score = 5.24606
sequence = ATGAAATTCCTTCAT

Gene: VIBHAR_02801: Protein of unknown function DUF1852
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -234
score = 5.30666
sequence = ATGAATTTCTTTCAT

Gene: VP1992: Protein of unknown function DUF1852
 
Vibrio shilonii AK1
*
Vibrio splendidus LGP32

Site:
position = -193
score = 4.88916
sequence = ATGAATATTCCTCAT

Gene: VS_1283: Protein of unknown function DUF1852
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
*
Vibrio angustum S14

Site:
position = -135
score = 5.06946
sequence = TTGAATTTTTTTCAT

Gene: VAS14_12469: Protein of unknown function DUF1852
 
Photobacterium profundum SS9
Protein of unknown function DUF1852
metE2
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6

Gene: VV20996: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_02800: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP1991: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32

Gene: VS_1282: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14

Gene: VAS14_12464: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
 
Photobacterium profundum SS9
Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
 
CRON 5.
metF
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -122
score = 4.88916
sequence = ATGAGTAATCTTCAT

Gene: VC2685: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
*
Vibrio vulnificus CMCP6

Site:
position = -130
score = 4.54764
sequence = TTGAGAAAAATTCAT

Gene: VV1_1366: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -128
score = 4.54764
sequence = TTGAGAAAAATTCAT

Gene: VIBHAR_00047: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -126
score = 4.31733
sequence = GTGAGAAAAATTCAT

Gene: VP2763: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
*
Vibrio shilonii AK1

Site:
position = -162
score = 5.50324
sequence = ATGAAAAAAATTCAT

Gene: VSAK1_09463: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Vibrio splendidus LGP32
*
Vibrio fischeri ES114

Site:
position = -142
score = 4.54764
sequence = TTGAGAAAAATTCAT

Gene: VF_2309: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
*
Vibrio salmonicida LFI1238

Site:
position = -162
score = 4.30447
sequence = TTGAAAATCCCTCAT

Site:
position = -140
score = 5.06946
sequence = TTGAAAAAAATTCAT

Gene: VSAL_I2762: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Vibrio angustum S14
*
Photobacterium profundum SS9

Site:
position = -160
score = 4.20908
sequence = TTGAAGTTTATGCAA

Site:
position = -138
score = 4.83915
sequence = GTGAAAAAAATTCAT

Gene: PBPRA0263: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
CRON 6.
glyA
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -154
score = 5.1223
sequence = ATGAAAAAACTGCAT

Gene: VC0941: Serine hydroxymethyltransferase (EC 2.1.2.1)
*
Vibrio vulnificus CMCP6

Site:
position = -153
score = 5.01603
sequence = ATGAAGAAACTGCAT

Gene: VV1_0286: Serine hydroxymethyltransferase (EC 2.1.2.1)
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -155
score = 5.1223
sequence = ATGAAAAAACTGCAT

Gene: VIBHAR_01208: Serine hydroxymethyltransferase (EC 2.1.2.1)
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -155
score = 5.1223
sequence = ATGAAAAAACTGCAT

Gene: VP0715: Serine hydroxymethyltransferase (EC 2.1.2.1)
*
Vibrio shilonii AK1

Site:
position = -157
score = 4.60048
sequence = ATGAGAAAACTGCAT

Gene: VSAK1_10503: Serine hydroxymethyltransferase (EC 2.1.2.1)
*
Vibrio splendidus LGP32

Site:
position = -156
score = 5.1223
sequence = ATGAAAAAACTGCAT

Site:
position = -143
score = 4.12435
sequence = ATGATAAAATTGCAA

Gene: VS_2373: Serine hydroxymethyltransferase (EC 2.1.2.1)
*
Vibrio fischeri ES114

Site:
position = -222
score = 4.10417
sequence = ATGCAATTATTTGAA

Site:
position = -182
score = 5.50324
sequence = ATGAATATATTTCAT

Gene: VF_0695: Serine hydroxymethyltransferase (EC 2.1.2.1)
*
Vibrio salmonicida LFI1238

Site:
position = -182
score = 5.32068
sequence = ATGAATATCTTTCAT

Gene: VSAL_I0864: Serine hydroxymethyltransferase (EC 2.1.2.1)
*
Vibrio angustum S14

Site:
position = -210
score = 5.13898
sequence = ATGAAAATGATTCAT

Gene: VAS14_16581: Serine hydroxymethyltransferase (EC 2.1.2.1)
*
Photobacterium profundum SS9

Site:
position = -212
score = 5.50324
sequence = ATGAAAATAATTCAT

Site:
position = -178
score = 4.07252
sequence = ATGAATAAATTGTAA

Gene: PBPRA0795: Serine hydroxymethyltransferase (EC 2.1.2.1)
Serine hydroxymethyltransferase (EC 2.1.2.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD