Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog BirA - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: BirA
Regulation mode: repressor
Biological process: Biotin biosynthesis
Effector: Biotin
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 32 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 2 2
Shewanella putrefaciens CN-32 5 2
Shewanella sp W3-18-1 5 2
Shewanella sp ANA-3 5 2
Shewanella sp MR-4 5 2
Shewanella sp MR-7 5 2
Shewanella baltica OS155 5 2
Shewanella denitrificans OS217 5 2
Shewanella frigidimarina NCIMB 400 5 2
Shewanella amazonensis SB2B 5 2
Shewanella loihica PV-4 5 2
Shewanella pealeana ATCC 700345 5 2
Shewanella halifaxensis HAW-EB4 5 2
Shewanella piezotolerans WP3 5 2
Shewanella sediminis HAW-EB3 5 2
Shewanella woodyi ATCC 51908 5 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
bioA
*
Shewanella oneidensis MR-1

Site:
position = -66
score = 7.84342
sequence = CTGTCAACG-(15)-GGTTTACCA

Gene: SO_2741: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Shewanella putrefaciens CN-32

Site:
position = -66
score = 7.52775
sequence = CTGTCAACG-(15)-AGTTTACTA

Gene: Sputcn32_2346: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Shewanella sp W3-18-1

Site:
position = -66
score = 7.52775
sequence = CTGTCAACG-(15)-AGTTTACTA

Gene: Sputw3181_1662: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Shewanella sp ANA-3

Site:
position = -66
score = 7.84342
sequence = CTGTCAACG-(15)-GGTTTACCA

Gene: Shewana3_2520: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Shewanella sp MR-4

Site:
position = -66
score = 7.84342
sequence = CTGTCAACG-(15)-GGTTTACCA

Gene: Shewmr4_2360: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Shewanella sp MR-7

Site:
position = -66
score = 7.84342
sequence = CTGTCAACG-(15)-GGTTTACCA

Gene: Shewmr7_2432: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Shewanella baltica OS155

Site:
position = -66
score = 7.52775
sequence = CTGTCAACG-(15)-AGTTTACTA

Gene: Sbal_1757: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Shewanella denitrificans OS217

Site:
position = -43
score = 6.75418
sequence = cTGTcAACg-(15)-acTTgACtA

Gene: Sden_1657: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Shewanella frigidimarina NCIMB 400

Site:
position = -60
score = 7.29355
sequence = CTGTCAACG-(15)-GCTTTACTA

Gene: Sfri_1474: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Shewanella amazonensis SB2B

Site:
position = -57
score = 7.81242
sequence = CTGTCAACG-(15)-GGTTTACTG

Gene: Sama_1437: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Shewanella loihica PV-4

Site:
position = -60
score = 7.95601
sequence = CTGTCAACG-(15)-GGTTTACTA

Gene: Shew_1718: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Shewanella pealeana ATCC 700345

Site:
position = -44
score = 7.29355
sequence = CTGTCAATG-(15)-GGTTTACTA

Gene: Spea_1800: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -44
score = 7.29355
sequence = CTGTCAATG-(15)-GGTTTACTA

Gene: Shal_2478: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Shewanella piezotolerans WP3

Site:
position = -44
score = 7.29355
sequence = CTGTCAATG-(15)-GGTTTACTA

Gene: swp_2929: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Shewanella sediminis HAW-EB3

Site:
position = -44
score = 7.95601
sequence = CTGTCAACG-(15)-GGTTTACTA

Gene: Ssed_2777: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Shewanella woodyi ATCC 51908

Site:
position = -44
score = 7.95601
sequence = CTGTCAACG-(15)-GGTTTACTA

Gene: Swoo_1865: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
CRON 2.
bioB
*
Shewanella oneidensis MR-1

Site:
position = -89
score = 7.84342
sequence = TGGTAAACC-(15)-CGTTGACAG

Gene: SO_2740: Biotin synthase (EC 2.8.1.6)
*
Shewanella putrefaciens CN-32

Site:
position = -90
score = 7.52775
sequence = TAGTAAACT-(15)-CGTTGACAG

Gene: Sputcn32_2345: Biotin synthase (EC 2.8.1.6)
*
Shewanella sp W3-18-1

Site:
position = -90
score = 7.52775
sequence = TAGTAAACT-(15)-CGTTGACAG

Gene: Sputw3181_1663: Biotin synthase (EC 2.8.1.6)
*
Shewanella sp ANA-3

Site:
position = -89
score = 7.84342
sequence = TGGTAAACC-(15)-CGTTGACAG

Gene: Shewana3_2519: Biotin synthase (EC 2.8.1.6)
*
Shewanella sp MR-4

Site:
position = -89
score = 7.84342
sequence = TGGTAAACC-(15)-CGTTGACAG

Gene: Shewmr4_2359: Biotin synthase (EC 2.8.1.6)
*
Shewanella sp MR-7

Site:
position = -89
score = 7.84342
sequence = TGGTAAACC-(15)-CGTTGACAG

Gene: Shewmr7_2431: Biotin synthase (EC 2.8.1.6)
*
Shewanella baltica OS155

Site:
position = -89
score = 7.52775
sequence = TAGTAAACT-(15)-CGTTGACAG

Gene: Sbal_1758: Biotin synthase (EC 2.8.1.6)
*
Shewanella denitrificans OS217

Site:
position = -86
score = 6.75418
sequence = TaGTcAAgt-(15)-cGTTgACAg

Gene: Sden_1658: Biotin synthase (EC 2.8.1.6)
*
Shewanella frigidimarina NCIMB 400

Site:
position = -87
score = 7.29355
sequence = TAGTAAAGC-(15)-CGTTGACAG

Gene: Sfri_1475: Biotin synthase (EC 2.8.1.6)
*
Shewanella amazonensis SB2B

Site:
position = -86
score = 7.81242
sequence = CAGTAAACC-(15)-CGTTGACAG

Gene: Sama_1438: Biotin synthase (EC 2.8.1.6)
*
Shewanella loihica PV-4

Site:
position = -122
score = 7.95601
sequence = TAGTAAACC-(15)-CGTTGACAG

Gene: Shew_1719: Biotin synthase (EC 2.8.1.6)
*
Shewanella pealeana ATCC 700345

Site:
position = -238
score = 7.29355
sequence = TAGTAAACC-(15)-CATTGACAG

Gene: Spea_1801: Biotin synthase (EC 2.8.1.6)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -236
score = 7.29355
sequence = TAGTAAACC-(15)-CATTGACAG

Gene: Shal_2477: Biotin synthase (EC 2.8.1.6)
*
Shewanella piezotolerans WP3

Site:
position = -242
score = 7.29355
sequence = TAGTAAACC-(15)-CATTGACAG

Gene: swp_2928: Biotin synthase (EC 2.8.1.6)
*
Shewanella sediminis HAW-EB3

Site:
position = -99
score = 7.95601
sequence = TAGTAAACC-(15)-CGTTGACAG

Gene: Ssed_2776: Biotin synthase (EC 2.8.1.6)
*
Shewanella woodyi ATCC 51908

Site:
position = -99
score = 7.95601
sequence = TAGTAAACC-(15)-CGTTGACAG

Gene: Swoo_1866: Biotin synthase (EC 2.8.1.6)
Biotin synthase (EC 2.8.1.6)
bioF
 
Shewanella oneidensis MR-1

Gene: SO_2739: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2344: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Shewanella sp W3-18-1

Gene: Sputw3181_1664: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Shewanella sp ANA-3

Gene: Shewana3_2518: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Shewanella sp MR-4

Gene: Shewmr4_2358: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Shewanella sp MR-7

Gene: Shewmr7_2430: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Shewanella baltica OS155

Gene: Sbal_1759: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Shewanella denitrificans OS217

Gene: Sden_1659: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1476: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Shewanella amazonensis SB2B

Gene: Sama_1439: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Shewanella loihica PV-4

Gene: Shew_1720: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Shewanella pealeana ATCC 700345

Gene: Spea_1802: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2476: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Shewanella piezotolerans WP3

Gene: swp_2927: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2775: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1867: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
8-amino-7-oxononanoate synthase (EC 2.3.1.47)
bioC
 
Shewanella oneidensis MR-1

Gene: SO_2738: Biotin synthesis protein bioC
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2343: Biotin synthesis protein bioC
 
Shewanella sp W3-18-1

Gene: Sputw3181_1665: Biotin synthesis protein bioC
 
Shewanella sp ANA-3

Gene: Shewana3_2517: Biotin synthesis protein bioC
 
Shewanella sp MR-4

Gene: Shewmr4_2357: Biotin synthesis protein bioC
 
Shewanella sp MR-7

Gene: Shewmr7_2429: Biotin synthesis protein bioC
 
Shewanella baltica OS155

Gene: Sbal_1760: Biotin synthesis protein bioC
 
Shewanella denitrificans OS217

Gene: Sden_1660: Biotin synthesis protein bioC
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1477: Biotin synthesis protein bioC
 
Shewanella amazonensis SB2B

Gene: Sama_1440: Biotin synthesis protein bioC
 
Shewanella loihica PV-4

Gene: Shew_1721: Biotin synthesis protein bioC
 
Shewanella pealeana ATCC 700345

Gene: Spea_1803: Biotin synthesis protein bioC
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2475: Biotin synthesis protein bioC
 
Shewanella piezotolerans WP3

Gene: swp_2926: Biotin synthesis protein bioC
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2774: Biotin synthesis protein bioC
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1868: Biotin synthesis protein bioC
Biotin synthesis protein bioC
bioD
 
Shewanella oneidensis MR-1

Gene: SO_2737: Dethiobiotin synthetase (EC 6.3.3.3)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2342: Dethiobiotin synthetase (EC 6.3.3.3)
 
Shewanella sp W3-18-1

Gene: Sputw3181_1666: Dethiobiotin synthetase (EC 6.3.3.3)
 
Shewanella sp ANA-3

Gene: Shewana3_2516: Dethiobiotin synthetase (EC 6.3.3.3)
 
Shewanella sp MR-4

Gene: Shewmr4_2356: Dethiobiotin synthetase (EC 6.3.3.3)
 
Shewanella sp MR-7

Gene: Shewmr7_2428: Dethiobiotin synthetase (EC 6.3.3.3)
 
Shewanella baltica OS155

Gene: Sbal_1761: Dethiobiotin synthetase (EC 6.3.3.3)
 
Shewanella denitrificans OS217

Gene: Sden_1661: Dethiobiotin synthetase (EC 6.3.3.3)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1478: Dethiobiotin synthetase (EC 6.3.3.3)
 
Shewanella amazonensis SB2B

Gene: Sama_1441: Dethiobiotin synthetase (EC 6.3.3.3)
 
Shewanella loihica PV-4

Gene: Shew_1722: Dethiobiotin synthetase (EC 6.3.3.3)
 
Shewanella pealeana ATCC 700345

Gene: Spea_1804: Dethiobiotin synthetase (EC 6.3.3.3)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2474: Dethiobiotin synthetase (EC 6.3.3.3)
 
Shewanella piezotolerans WP3

Gene: swp_2925: Dethiobiotin synthetase (EC 6.3.3.3)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2773: Dethiobiotin synthetase (EC 6.3.3.3)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1869: Dethiobiotin synthetase (EC 6.3.3.3)
Dethiobiotin synthetase (EC 6.3.3.3)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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