Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog MetJ - Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: MetJ
Regulation mode: repressor
Biological process: Methionine metabolism; Methionine biosynthesis
Effector: S-adenosylmethionine
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 110 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudoalteromonas atlantica T6c 9 7
Alteromonas macleodii 'Deep ecotype' 10 6
Glaciecola sp. HTCC2999 10 6
Colwellia psychrerythraea 34H 14 9
Alteromonadales bacterium TW-7 13 8
Pseudoalteromonas haloplanktis TAC125 14 9
Pseudoalteromonas tunicata D2 19 12
Idiomarina baltica OS145 7 6
Idiomarina loihiensis L2TR 8 7
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
metR
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
*
Colwellia psychrerythraea 34H

Site:
position = -83
score = 6.36125
sequence = AGACGTTT-(0)-AAATGGTT

Site:
position = -91
score = 7.33184
sequence = GGACGTCT-(0)-AGACGTTT

Gene: CPS_4359: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Alteromonadales bacterium TW-7

Site:
position = -81
score = 6.08992
sequence = AGACGTTG-(0)-AAACGTTT

Site:
position = -89
score = 6.77558
sequence = AGACGTCT-(0)-AGACGTTG

Gene: ATW7_06703: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -89
score = 6.1164
sequence = AGCCTTCT-(0)-AGACGTTG

Site:
position = -81
score = 6.08992
sequence = AGACGTTG-(0)-AAACGTTT

Gene: PSHAa1181: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Pseudoalteromonas tunicata D2

Site:
position = -375
score = 6.05447
sequence = GGATGTTT-(0)-AGATGGCT

Gene: PTD2_22482: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
 
CRON 2.
metB
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
*
Colwellia psychrerythraea 34H

Site:
position = -169
score = 6.37284
sequence = AGAAGTTT-(0)-AGAAGTCT

Site:
position = -121
score = 5.98668
sequence = AGAGTTAT-(0)-AGACGTCC

Site:
position = -113
score = 7.19799
sequence = AGACGTCC-(0)-AAACATCT

Gene: CPS_0455: Cystathionine gamma-synthase (EC 2.5.1.48)
*
Alteromonadales bacterium TW-7

Site:
position = -36
score = 7.56226
sequence = AGACGTCT-(0)-AAACATCC

Gene: ATW7_17928: Cystathionine gamma-synthase (EC 2.5.1.48)
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -36
score = 7.86975
sequence = AGACGTCT-(0)-AAACATCT

Gene: PSHAa2723: Cystathionine gamma-synthase (EC 2.5.1.48)
*
Pseudoalteromonas tunicata D2

Site:
position = -91
score = 6.05606
sequence = AGCTATTT-(0)-AGACGTAT

Site:
position = -44
score = 6.54815
sequence = AACCTTTT-(0)-AGACGTCT

Site:
position = -83
score = 6.49919
sequence = AGACGTAT-(0)-AAATGTTT

Site:
position = -36
score = 7.86975
sequence = AGACGTCT-(0)-AAACATCT

Gene: PTD2_16511: Cystathionine gamma-synthase (EC 2.5.1.48)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Cystathionine gamma-synthase (EC 2.5.1.48)
metL
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_0456: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
 
Alteromonadales bacterium TW-7

Gene: ATW7_17933: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa2722: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_16506: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
*
Idiomarina baltica OS145

Site:
position = -97
score = 6.62678
sequence = ATCCGTCT-(0)-AGATGGCT

Gene: OS145_09128: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
*
Idiomarina loihiensis L2TR

Site:
position = -97
score = 6.62678
sequence = ATCCGTCT-(0)-AGATGGCT

Gene: IL2466: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
 
CRON 3.
metF-II
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
*
Colwellia psychrerythraea 34H

Site:
position = -38
score = 7.6773
sequence = AGCCATCT-(0)-AAACGTCT

Gene: CPS_0276: 5,10-methylenetetrahydrofolate reductase, non-orthologous isozyme (EC 1.5.1.20)
*
Alteromonadales bacterium TW-7

Site:
position = -65
score = 6.57736
sequence = ATCTATCT-(0)-AGACGTCT

Site:
position = -57
score = 7.30654
sequence = AGACGTCT-(0)-AAATGGCT

Gene: ATW7_04247: 5,10-methylenetetrahydrofolate reductase, non-orthologous isozyme (EC 1.5.1.20)
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -68
score = 6.47407
sequence = AGCTATCT-(0)-AGCCATCT

Site:
position = -60
score = 6.92022
sequence = AGCCATCT-(0)-AAATGGCT

Gene: PSHAa0642: 5,10-methylenetetrahydrofolate reductase, non-orthologous isozyme (EC 1.5.1.20)
*
Pseudoalteromonas tunicata D2

Site:
position = -58
score = 7.30654
sequence = AGACGTCT-(0)-AAATGGCT

Gene: PTD2_08889: 5,10-methylenetetrahydrofolate reductase, non-orthologous isozyme (EC 1.5.1.20)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
5,10-methylenetetrahydrofolate reductase, non-orthologous isozyme (EC 1.5.1.20)
 
CRON 4.
metK
*
Pseudoalteromonas atlantica T6c

Site:
position = -100
score = 7.13131
sequence = AGCCGTTT-(0)-GGACGTCT

Gene: Patl_3331: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -95
score = 7.40748
sequence = AGACTTTT-(0)-AGACGTCT

Gene: MADE_03161: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Glaciecola sp. HTCC2999

Site:
position = -115
score = 6.94813
sequence = AGACGTCT-(0)-AGATGGTT

Site:
position = -123
score = 7.50002
sequence = AGACGTAT-(0)-AGACGTCT

Gene: GHTCC_010100002529: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Colwellia psychrerythraea 34H

Site:
position = -100
score = 7.29791
sequence = AGACGTTT-(0)-AGCCGTCT

Gene: CPS_1256: S-adenosylmethionine synthetase (EC 2.5.1.6)
 
Alteromonadales bacterium TW-7

Gene: ATW7_04382: S-adenosylmethionine synthetase (EC 2.5.1.6)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa0670: S-adenosylmethionine synthetase (EC 2.5.1.6)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_13384: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Idiomarina baltica OS145

Site:
position = -99
score = 6.93368
sequence = AGACTTTT-(0)-GGACGTCT

Gene: OS145_07801: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Idiomarina loihiensis L2TR

Site:
position = -99
score = 6.72663
sequence = GGACTTTT-(0)-AGACGTCC

Gene: IL2215: S-adenosylmethionine synthetase (EC 2.5.1.6)
S-adenosylmethionine synthetase (EC 2.5.1.6)
 
CRON 5.
serA
*
Pseudoalteromonas atlantica T6c

Site:
position = -45
score = 7.28817
sequence = AGACGTCC-(0)-AGATGTCT

Gene: Patl_1156: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -93
score = 7.95992
sequence = AGACGTCT-(0)-AGATGTCT

Gene: MADE_03208: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
*
Glaciecola sp. HTCC2999

Site:
position = -46
score = 7.95992
sequence = AGACGTCT-(0)-AGATGTCT

Site:
position = -54
score = 6.1038
sequence = AAGCATTT-(0)-AGACGTCT

Gene: GHTCC_010100002789: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
*
Colwellia psychrerythraea 34H

Site:
position = -64
score = 6.70484
sequence = AGATATCT-(0)-AGCCATCT

Gene: CPS_1544: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Alteromonadales bacterium TW-7

Gene: ATW7_04362: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa0666: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_12904: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Idiomarina baltica OS145

Gene: OS145_04268: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Idiomarina loihiensis L2TR

Gene: IL2104: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
CRON 6.
metA
*
Pseudoalteromonas atlantica T6c

Site:
position = -88
score = 6.2221
sequence = TTACGTTT-(0)-AGACGTCT

Site:
position = -80
score = 6.571
sequence = AGACGTCT-(0)-AGACGTAA

Gene: Patl_3021: Homoserine O-succinyltransferase (EC 2.3.1.46)
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -81
score = 6.571
sequence = AGACGTCT-(0)-AGACGTAA

Site:
position = -89
score = 7.20732
sequence = AAACGTTT-(0)-AGACGTCT

Gene: MADE_02861: Homoserine O-succinyltransferase (EC 2.3.1.46)
*
Glaciecola sp. HTCC2999

Site:
position = -78
score = 7.50064
sequence = AGACGTCT-(0)-AGACGTAT

Site:
position = -86
score = 7.83589
sequence = AGACGTTT-(0)-AGACGTCT

Gene: GHTCC_010100000045: Homoserine O-succinyltransferase (EC 2.3.1.46)
*
Colwellia psychrerythraea 34H

Site:
position = -92
score = 7.18127
sequence = AGACGTCT-(0)-ATACGTTT

Gene: CPS_1100: Homoserine O-succinyltransferase (EC 2.3.1.46)
*
Alteromonadales bacterium TW-7

Site:
position = -82
score = 7.36984
sequence = AGACATCT-(0)-ATACATCT

Gene: ATW7_10333: Homoserine O-succinyltransferase (EC 2.3.1.46)
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -82
score = 6.83186
sequence = AGACATCT-(0)-ATCCATCT

Site:
position = -90
score = 6.46214
sequence = GGATATTT-(0)-AGACATCT

Gene: PSHAa2224: Homoserine O-succinyltransferase (EC 2.3.1.46)
*
Pseudoalteromonas tunicata D2

Site:
position = -83
score = 7.7142
sequence = AGACATCT-(0)-AAACATCT

Gene: PTD2_08609: Homoserine O-succinyltransferase (EC 2.3.1.46)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Homoserine O-succinyltransferase (EC 2.3.1.46)
metH2
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_02860: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100000040: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7

Gene: ATW7_10328: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa2223: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_08614: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
metH
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_02859: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100000035: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
 
Colwellia psychrerythraea 34H

Gene: CPS_1101: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
 
Alteromonadales bacterium TW-7

Gene: ATW7_10323: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa2222: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_08619: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
 
CRON 7.
metJ
*
Pseudoalteromonas atlantica T6c

Site:
position = -126
score = 7.46252
sequence = GGACGTTT-(0)-AGACGTCT

Site:
position = -90
score = 6.16276
sequence = AGCCGTCA-(0)-AGATGTTT

Gene: Patl_3956: S-adenosylmethionine-responsive transcriptional repressor MetJ
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -132
score = 7.83589
sequence = AGACGTTT-(0)-AGACGTCT

Site:
position = -96
score = 5.99121
sequence = AGACGTCA-(0)-AGAGGTTT

Gene: MADE_03523: S-adenosylmethionine-responsive transcriptional repressor MetJ
*
Glaciecola sp. HTCC2999

Site:
position = -122
score = 7.83589
sequence = AGACGTTT-(0)-AGACGTCT

Gene: GHTCC_010100003244: S-adenosylmethionine-responsive transcriptional repressor MetJ
*
Colwellia psychrerythraea 34H

Site:
position = -143
score = 6.12205
sequence = GGACGTCT-(0)-ATAACTCT

Site:
position = -95
score = 6.75633
sequence = AGACTTCT-(0)-AAACTTCT

Site:
position = -151
score = 6.71112
sequence = AGATGTTT-(0)-GGACGTCT

Gene: CPS_0454: S-adenosylmethionine-responsive transcriptional repressor MetJ
*
Alteromonadales bacterium TW-7

Site:
position = -140
score = 5.65239
sequence = AGATGTCA-(0)-AAACATTT

Site:
position = -179
score = 6.81155
sequence = GGATGTTT-(0)-AGACGTCT

Gene: ATW7_17923: S-adenosylmethionine-responsive transcriptional repressor MetJ
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -179
score = 7.18492
sequence = AGATGTTT-(0)-AGACGTCT

Site:
position = -124
score = 5.92899
sequence = AAACACCT-(0)-AGCCATCT

Gene: PSHAa2724: S-adenosylmethionine-responsive transcriptional repressor MetJ
*
Pseudoalteromonas tunicata D2

Site:
position = -224
score = 7.18492
sequence = AGATGTTT-(0)-AGACGTCT

Site:
position = -177
score = 6.52784
sequence = AAACATTT-(0)-ATACGTCT

Site:
position = -169
score = 6.48411
sequence = ATACGTCT-(0)-AAATAGCT

Site:
position = -216
score = 6.36624
sequence = AGACGTCT-(0)-AAAAGGTT

Gene: PTD2_16516: S-adenosylmethionine-responsive transcriptional repressor MetJ
*
Idiomarina baltica OS145

Site:
position = -93
score = 6.64052
sequence = AGCCATCT-(0)-AGACGGAT

Gene: OS145_09123: S-adenosylmethionine-responsive transcriptional repressor MetJ
*
Idiomarina loihiensis L2TR

Site:
position = -93
score = 6.64052
sequence = AGCCATCT-(0)-AGACGGAT

Gene: IL2465: S-adenosylmethionine-responsive transcriptional repressor MetJ
S-adenosylmethionine-responsive transcriptional repressor MetJ
 
CRON 8.
metT
*
Pseudoalteromonas atlantica T6c

Site:
position = -27
score = 7.75613
sequence = AGACGTCT-(0)-AAACGTCC

Gene: Patl_1376: Methionine transporter MetT, NhaC antiporter family
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
*
Colwellia psychrerythraea 34H

Site:
position = -79
score = 7.48343
sequence = AGCCATCT-(0)-AAACATCT

Site:
position = -87
score = 6.00051
sequence = AGTCATTT-(0)-AGCCATCT

Gene: CPS_3465: Methionine transporter MetT, NhaC antiporter family
*
Alteromonadales bacterium TW-7

Site:
position = -156
score = 5.68583
sequence = ATACATTT-(0)-AAACTTCC

Site:
position = -164
score = 6.60109
sequence = AGCCATCT-(0)-ATACATTT

Gene: ATW7_06968: Methionine transporter MetT, NhaC antiporter family
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -148
score = 5.99332
sequence = ATACATTT-(0)-AAACTTCT

Site:
position = -156
score = 6.75663
sequence = AGCCGTCT-(0)-ATACATTT

Gene: PSHAa1226: Methionine transporter MetT, NhaC antiporter family
*
Pseudoalteromonas tunicata D2

Site:
position = -125
score = 6.2936
sequence = AGCCATCT-(0)-ATACATTC

Site:
position = -133
score = 6.72724
sequence = AAACATCT-(0)-AGCCATCT

Gene: PTD2_10704: Methionine transporter MetT, NhaC antiporter family
*
Idiomarina baltica OS145

Site:
position = -50
score = 6.71242
sequence = AAACTTCT-(0)-GGACGTCT

Site:
position = -58
score = 5.40429
sequence = AGCTATAT-(0)-AAACTTCT

Gene: OS145_08567: Methionine transporter MetT, NhaC antiporter family
*
Idiomarina loihiensis L2TR

Site:
position = -40
score = 6.40494
sequence = AAACTTCT-(0)-GGACGTCC

Site:
position = -48
score = 5.55983
sequence = AGCTGTAT-(0)-AAACTTCT

Gene: IL2378: Methionine transporter MetT, NhaC antiporter family
Methionine transporter MetT, NhaC antiporter family
 
CRON 9.
metF
*
Pseudoalteromonas atlantica T6c

Site:
position = -36
score = 7.75613
sequence = AGACGTCT-(0)-AAACGTCC

Site:
position = -80
score = 6.6431
sequence = AGACTGCT-(0)-AAACATCT

Gene: Patl_3955: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -45
score = 8.06362
sequence = AGACGTCT-(0)-AAACGTCT

Site:
position = -73
score = 6.32155
sequence = TGACGTCT-(0)-AGACATAT

Gene: MADE_03524: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
*
Glaciecola sp. HTCC2999

Site:
position = -46
score = 8.06362
sequence = AGACGTCT-(0)-AAACGTCT

Gene: GHTCC_010100003239: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
CRON 10.
COG0235
 
Pseudoalteromonas atlantica T6c

Gene: Patl_1685: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_01738: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100005477: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
 
Colwellia psychrerythraea 34H

Gene: CPS_1172: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
*
Alteromonadales bacterium TW-7

Site:
position = -54
score = 7.44134
sequence = AGACTTCT-(0)-AAACATCT

Gene: ATW7_14626: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -54
score = 7.44134
sequence = AGACTTCT-(0)-AAACATCT

Gene: PSHAa0286: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
*
Pseudoalteromonas tunicata D2

Site:
position = -85
score = 6.29114
sequence = AGACTTCT-(0)-ACACTTCT

Gene: PTD2_06859: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
COG4948
 
Pseudoalteromonas atlantica T6c

Gene: Patl_1686: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_01739: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100005472: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
 
Colwellia psychrerythraea 34H

Gene: CPS_1173: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
 
Alteromonadales bacterium TW-7

Gene: ATW7_14621: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa0287: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
 
Pseudoalteromonas tunicata D2

Gene: PTD2_06864: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
 
CRON 11.
thrA
*
Pseudoalteromonas atlantica T6c

Site:
position = -239
score = 6.31581
sequence = AGACGTCT-(0)-ATACGGCA

Site:
position = -247
score = 6.35926
sequence = TGACATAT-(0)-AGACGTCT

Site:
position = -262
score = 7.23141
sequence = AGACGTCT-(0)-AGACGGTT

Gene: Patl_3580: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -242
score = 6.31581
sequence = AGACGTCT-(0)-ATACGGCA

Site:
position = -250
score = 6.0864
sequence = TGACTTAT-(0)-AGACGTCT

Gene: MADE_03328: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
*
Glaciecola sp. HTCC2999

Site:
position = -188
score = 6.69512
sequence = TGACATTT-(0)-AGACGTCT

Site:
position = -180
score = 6.31581
sequence = AGACGTCT-(0)-ATACGGCA

Gene: GHTCC_010100002414: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
 
Colwellia psychrerythraea 34H

Gene: CPS_4291: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
 
Alteromonadales bacterium TW-7

Gene: ATW7_11055: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa2379: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_12584: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
thrB
 
Pseudoalteromonas atlantica T6c

Gene: Patl_3579: Homoserine kinase (EC 2.7.1.39)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_03327: Homoserine kinase (EC 2.7.1.39)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100002419: Homoserine kinase (EC 2.7.1.39)
 
Colwellia psychrerythraea 34H

Gene: CPS_4290: Homoserine kinase (EC 2.7.1.39)
 
Alteromonadales bacterium TW-7

Gene: ATW7_11050: Homoserine kinase (EC 2.7.1.39)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa2378: Homoserine kinase (EC 2.7.1.39)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_12579: Homoserine kinase (EC 2.7.1.39)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Homoserine kinase (EC 2.7.1.39)
thrC
 
Pseudoalteromonas atlantica T6c

Gene: Patl_3578: Threonine synthase (EC 4.2.3.1)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_03326: Threonine synthase (EC 4.2.3.1)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100002424: Threonine synthase (EC 4.2.3.1)
 
Colwellia psychrerythraea 34H

Gene: CPS_4289: Threonine synthase (EC 4.2.3.1)
 
Alteromonadales bacterium TW-7

Gene: ATW7_11045: Threonine synthase (EC 4.2.3.1)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa2377: Threonine synthase (EC 4.2.3.1)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_12574: Threonine synthase (EC 4.2.3.1)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Threonine synthase (EC 4.2.3.1)
 
CRON 12.
metX
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
*
Idiomarina baltica OS145

Site:
position = -77
score = 7.49638
sequence = GGACGTCT-(0)-AAACATCT

Gene: OS145_04750: Homoserine O-acetyltransferase (EC 2.3.1.31)
*
Idiomarina loihiensis L2TR

Site:
position = -67
score = 5.6938
sequence = AAATGTCT-(0)-TGACGTCC

Site:
position = -75
score = 7.40697
sequence = GGACGTCT-(0)-AAATGTCT

Gene: IL2013: Homoserine O-acetyltransferase (EC 2.3.1.31)
Homoserine O-acetyltransferase (EC 2.3.1.31)
metY
 
Pseudoalteromonas atlantica T6c

Gene: Patl_3406: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100007942: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
 
Colwellia psychrerythraea 34H

Gene: CPS_2546: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
 
Alteromonadales bacterium TW-7

Gene: ATW7_00225: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAb0477: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145

Gene: OS145_04755: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
 
Idiomarina loihiensis L2TR

Gene: IL2014: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
 
CRON 13.
PF08908
 
Pseudoalteromonas atlantica T6c

Gene: Patl_0920: Protein of unknown function DUF1852
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_01037: Protein of unknown function DUF1852
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_1152: Protein of unknown function DUF1852
*
Alteromonadales bacterium TW-7

Site:
position = -245
score = 7.31019
sequence = AGAAATCT-(0)-AGACGTCT

Gene: ATW7_00705: Protein of unknown function DUF1852
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1471: Protein of unknown function DUF1852
*
Pseudoalteromonas tunicata D2

Site:
position = -228
score = 6.618
sequence = AGACATCT-(0)-AGATTTCC

Gene: PTD2_14897: Protein of unknown function DUF1852
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Protein of unknown function DUF1852
metE2
 
Pseudoalteromonas atlantica T6c

Gene: Patl_0921: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_01036: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_1151: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
 
Alteromonadales bacterium TW-7

Gene: ATW7_00710: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1470: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_14892: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
 
CRON 14.
msrA
 
Pseudoalteromonas atlantica T6c

Gene: Patl_4063: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_03638: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100007352: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)
 
Colwellia psychrerythraea 34H

Gene: CPS_4817: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
*
Idiomarina baltica OS145

Site:
position = -32
score = 6.53336
sequence = AGCCTTAT-(0)-AGACGTCC

Gene: OS145_04880: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)
*
Idiomarina loihiensis L2TR

Site:
position = -39
score = 7.11371
sequence = AGCCATAT-(0)-AGACGTCT

Gene: IL2039: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)
Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)
 
CRON 15.
mtnB
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -52
score = 6.52045
sequence = AGAAGTTT-(0)-AGCCGTCT

Gene: PSHAa2922: Methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109)
*
Pseudoalteromonas tunicata D2

Site:
position = -35
score = 6.11721
sequence = AGATGTAT-(0)-AGCCATCT

Gene: PTD2_09374: Methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109)
mtnC
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2

Gene: PTD2_09379: 2,3-diketo-5-methylthiopentyl-1-phosphate enolase-phosphatase (EC 3.1.3.77)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
2,3-diketo-5-methylthiopentyl-1-phosphate enolase-phosphatase (EC 3.1.3.77)
mtnD
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2

Gene: PTD2_09384: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54)
 
CRON 16.
btuB2
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
*
Idiomarina loihiensis L2TR

Site:
position = -42
score = 7.58981
sequence = AGACGTCT-(0)-AAACGGCT

Site:
position = -50
score = 7.60512
sequence = AGCCGTTT-(0)-AGACGTCT

Gene: IL2488: TonB-dependent outer membrane transporter for vitamin B12
TonB-dependent outer membrane transporter for vitamin B12
 
CRON 17.
btuD
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
*
Colwellia psychrerythraea 34H

Site:
position = -217
score = 7.48343
sequence = AGCCATCT-(0)-AAACATCT

Gene: CPS_1166: Vitamin B12 ABC transporter, ATPase component BtuD
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Vitamin B12 ABC transporter, ATPase component BtuD
btuC
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_1165: Vitamin B12 ABC transporter, permease component BtuC
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Vitamin B12 ABC transporter, permease component BtuC
pduO
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_1164: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
btuF
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_1163: Vitamin B12 ABC transporter, B12-binding component BtuF
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Vitamin B12 ABC transporter, B12-binding component BtuF
 
CRON 18.
metE
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
*
Pseudoalteromonas tunicata D2

Site:
position = -36
score = 7.17595
sequence = AGCCATCT-(0)-AAACATCC

Gene: PTD2_22477: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
 
CRON 19.
mtnK
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
*
Pseudoalteromonas tunicata D2

Site:
position = -60
score = 5.84047
sequence = GGACATCT-(0)-AAACACTT

Site:
position = -68
score = 6.79806
sequence = AGAAGTCT-(0)-GGACATCT

Gene: PTD2_09409: 5-methylthioribose kinase (EC 2.7.1.100)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
5-methylthioribose kinase (EC 2.7.1.100)
 
CRON 20.
PSHAa2276
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -17
score = 6.08938
sequence = GGCTATAT-(0)-AGACGTCT

Gene: PSHAa2276: putative orphan protein
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
putative orphan protein
btuB
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_1162: TonB-dependent outer membrane transporter for vitamin B12
 
Alteromonadales bacterium TW-7

Gene: ATW7_10608: TonB-dependent outer membrane transporter for vitamin B12
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa2275: TonB-dependent outer membrane transporter for vitamin B12
*
Pseudoalteromonas tunicata D2

Site:
position = -313
score = 7.12678
sequence = AGACATCT-(0)-GAACGTCC

Gene: PTD2_14279: TonB-dependent outer membrane transporter for vitamin B12
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
TonB-dependent outer membrane transporter for vitamin B12
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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