Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog BglR - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Beta-glucosides utilization
Effector: Beta-glucoside
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 24 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1
Shewanella putrefaciens CN-32
Shewanella sp W3-18-1
Shewanella sp ANA-3
Shewanella sp MR-4
Shewanella sp MR-7
Shewanella baltica OS155 6 2
Shewanella denitrificans OS217 7 3
Shewanella frigidimarina NCIMB 400 7 3
Shewanella amazonensis SB2B 9 4
Shewanella loihica PV-4
Shewanella pealeana ATCC 700345
Shewanella halifaxensis HAW-EB4
Shewanella piezotolerans WP3 10 4
Shewanella sediminis HAW-EB3
Shewanella woodyi ATCC 51908 7 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
Sden_2610
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
*
Shewanella denitrificans OS217

Site:
position = -143
score = 6.80819
sequence = TATGTAAGCGCTTACATT

Site:
position = -304
score = 6.31127
sequence = AAAGAAAGCGCTTACATT

Gene: Sden_2610: Predicted beta-glucoside specific TonB-dependent outer membrane receptor
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Predicted beta-glucoside specific TonB-dependent outer membrane receptor
omp(Bgl)
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155

Gene: Sbal_1125: Predicted beta-glucoside specific TonB-dependent outer membrane receptor
 
Shewanella denitrificans OS217
*
Shewanella frigidimarina NCIMB 400

Site:
position = -143
score = 6.80819
sequence = TATGTAAGCGCTTACATT

Site:
position = -304
score = 6.31127
sequence = AAAGAAAGCGCTTACATT

Gene: Sfri_1313: Predicted beta-glucoside specific TonB-dependent outer membrane receptor
*
Shewanella amazonensis SB2B

Site:
position = -116
score = 6.80819
sequence = TATGTAAGCGCTTACATT

Gene: Sama_1399: Predicted beta-glucoside specific TonB-dependent outer membrane receptor
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
*
Shewanella piezotolerans WP3

Site:
position = -63
score = 6.25371
sequence = TTTGTAAGCGCTTACATT

Site:
position = -108
score = 5.49871
sequence = TGTGTAAGCGCTTACAAA

Gene: swp_1631: Predicted beta-glucoside specific TonB-dependent outer membrane receptor
 
Shewanella sediminis HAW-EB3
*
Shewanella woodyi ATCC 51908

Site:
position = -109
score = 6.45425
sequence = AATGTAAGCGCTTACAAT

Gene: Swoo_1144: Predicted beta-glucoside specific TonB-dependent outer membrane receptor
Predicted beta-glucoside specific TonB-dependent outer membrane receptor
 
CRON 2.
bglA1
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
*
Shewanella baltica OS155

Site:
position = -147
score = 6.86574
sequence = AATGTAAGCGCTTTCATT

Gene: Sbal_1131: Cytoplasmic beta-glucosidase (EC 3.2.1.21)
*
Shewanella denitrificans OS217

Site:
position = -177
score = 6.86574
sequence = AATGTAAGCGCTTTCATT

Gene: Sden_2607: Cytoplasmic beta-glucosidase (EC 3.2.1.21)
*
Shewanella frigidimarina NCIMB 400

Site:
position = -176
score = 6.86574
sequence = AATGTAAGCGCTTTCATT

Gene: Sfri_1316: Cytoplasmic beta-glucosidase (EC 3.2.1.21)
*
Shewanella amazonensis SB2B

Site:
position = -134
score = 6.86574
sequence = AATGTAAGCGCTTTCATT

Gene: Sama_1402: Cytoplasmic beta-glucosidase (EC 3.2.1.21)
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
*
Shewanella piezotolerans WP3

Site:
position = -294
score = 6.86574
sequence = AATGTAAGCGCTTTCATT

Site:
position = -233
score = 6.86574
sequence = AATGTAAGCGCTTTCATT

Gene: swp_1634: Cytoplasmic beta-glucosidase (EC 3.2.1.21)
 
Shewanella sediminis HAW-EB3
*
Shewanella woodyi ATCC 51908

Site:
position = -199
score = 6.35055
sequence = GATGTAAGCGCTTTCATT

Gene: Swoo_1147: Cytoplasmic beta-glucosidase (EC 3.2.1.21)
Cytoplasmic beta-glucosidase (EC 3.2.1.21)
bglT
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155

Gene: Sbal_1130: Predicted beta-glucoside transporter, GPH family
 
Shewanella denitrificans OS217

Gene: Sden_2608: Predicted beta-glucoside transporter, GPH family
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1315: Predicted beta-glucoside transporter, GPH family
 
Shewanella amazonensis SB2B

Gene: Sama_1401: Predicted beta-glucoside transporter, GPH family
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3

Gene: swp_1633: Predicted beta-glucoside transporter, GPH family
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1146: Predicted beta-glucoside transporter, GPH family
Predicted beta-glucoside transporter, GPH family
bglR
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155

Gene: Sbal_1129: Transcriptional regulator of beta-glucosides utilization, LacI family
 
Shewanella denitrificans OS217

Gene: Sden_2609: Transcriptional regulator of beta-glucosides utilization, LacI family
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1314: Transcriptional regulator of beta-glucosides utilization, LacI family
 
Shewanella amazonensis SB2B

Gene: Sama_1400: Transcriptional regulator of beta-glucosides utilization, LacI family
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3

Gene: swp_1632: Transcriptional regulator of beta-glucosides utilization, LacI family
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1145: Transcriptional regulator of beta-glucosides utilization, LacI family
Transcriptional regulator of beta-glucosides utilization, LacI family
 
CRON 3.
bglT2
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
*
Shewanella piezotolerans WP3

Site:
position = -100
score = 6.45425
sequence = AATGTAAGCGGTTACATT

Gene: swp_4298: Sugar:cation symporter family protein
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Sugar:cation symporter family protein
celP
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3

Gene: swp_4297: Cellobiose phosphorylase
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Cellobiose phosphorylase
gntK
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3

Gene: swp_4296: Gluconokinase (EC 2.7.1.12)
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Gluconokinase (EC 2.7.1.12)
 
CRON 4.
lamA
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
*
Shewanella amazonensis SB2B

Site:
position = -97
score = 7.00872
sequence = AATGTAAGCGCTTACATT

Gene: Sama_1396: Beta-glucanase precursor (EC 3.2.1.73)
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908

Gene: Swoo_4376: Beta-glucanase precursor (EC 3.2.1.73)
Beta-glucanase precursor (EC 3.2.1.73)
omp(Bgl)
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B

Gene: Sama_1397: Predicted beta-glucoside specific TonB-dependent outer membrane receptor
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908

Gene: Swoo_4375: Predicted beta-glucoside specific TonB-dependent outer membrane receptor
Predicted beta-glucoside specific TonB-dependent outer membrane receptor
 
CRON 5.
glcP
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
*
Shewanella baltica OS155

Site:
position = -138
score = 6.86574
sequence = AATGAAAGCGCTTACATT

Gene: Sbal_1132: Predicted glucose transporter in beta-glucoside utilization gene cluster
*
Shewanella denitrificans OS217

Site:
position = -195
score = 6.86574
sequence = AATGAAAGCGCTTACATT

Gene: Sden_2606: Predicted glucose transporter in beta-glucoside utilization gene cluster
*
Shewanella frigidimarina NCIMB 400

Site:
position = -224
score = 6.86574
sequence = AATGAAAGCGCTTACATT

Gene: Sfri_1317: Predicted glucose transporter in beta-glucoside utilization gene cluster
*
Shewanella amazonensis SB2B

Site:
position = -111
score = 6.86574
sequence = AATGAAAGCGCTTACATT

Gene: Sama_1403: Predicted glucose transporter in beta-glucoside utilization gene cluster
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
*
Shewanella piezotolerans WP3

Site:
position = -252
score = 6.86574
sequence = AATGAAAGCGCTTACATT

Site:
position = -191
score = 6.86574
sequence = AATGAAAGCGCTTACATT

Gene: swp_1636: Predicted glucose transporter in beta-glucoside utilization gene cluster
 
Shewanella sediminis HAW-EB3
*
Shewanella woodyi ATCC 51908

Site:
position = -127
score = 6.35055
sequence = AATGAAAGCGCTTACATC

Gene: Swoo_1148: Predicted glucose transporter in beta-glucoside utilization gene cluster
Predicted glucose transporter in beta-glucoside utilization gene cluster
bglA2
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155

Gene: Sbal_1133: Periplasmic beta-glucosidase (EC 3.2.1.21)
 
Shewanella denitrificans OS217

Gene: Sden_2605: Periplasmic beta-glucosidase (EC 3.2.1.21)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1318: Periplasmic beta-glucosidase (EC 3.2.1.21)
 
Shewanella amazonensis SB2B

Gene: Sama_1404: Periplasmic beta-glucosidase (EC 3.2.1.21)
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3

Gene: swp_1637: Periplasmic beta-glucosidase (EC 3.2.1.21)
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1149: Periplasmic beta-glucosidase (EC 3.2.1.21)
Periplasmic beta-glucosidase (EC 3.2.1.21)
lamA
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217

Gene: Sden_2604: Beta-glucanase precursor (EC 3.2.1.73)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1319: Beta-glucanase precursor (EC 3.2.1.73)
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3

Gene: swp_1638: Beta-glucanase precursor (EC 3.2.1.73)
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Beta-glucanase precursor (EC 3.2.1.73)
glk
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155

Gene: Sbal_1134: Glucokinase, ROK family (EC 2.7.1.2)
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1321: Glucokinase, ROK family (EC 2.7.1.2)
 
Shewanella amazonensis SB2B

Gene: Sama_1405: Glucokinase, ROK family (EC 2.7.1.2)
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1150: Glucokinase, ROK family (EC 2.7.1.2)
Glucokinase, ROK family (EC 2.7.1.2)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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