Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog AgaR - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: DeoR
Regulation mode: repressor
Biological process: N-acetylgalactosamine utilization
Effector: N-acetylgalactosamine-6-phosphate; Galactosamine-6-phosphate
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1
Shewanella putrefaciens CN-32
Shewanella sp W3-18-1
Shewanella sp ANA-3 8 2
Shewanella sp MR-4 8 2
Shewanella sp MR-7 8 2
Shewanella baltica OS155
Shewanella denitrificans OS217
Shewanella frigidimarina NCIMB 400
Shewanella amazonensis SB2B 8 2
Shewanella loihica PV-4
Shewanella pealeana ATCC 700345
Shewanella halifaxensis HAW-EB4
Shewanella piezotolerans WP3
Shewanella sediminis HAW-EB3
Shewanella woodyi ATCC 51908
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
omp_aga
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
*
Shewanella sp ANA-3

Site:
position = -157
score = 6.09341
sequence = GAAACTTTTTGAAAG

Gene: Shewana3_2703: TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane
*
Shewanella sp MR-4

Site:
position = -157
score = 6.09341
sequence = GAAACTTTTTGAAAG

Gene: Shewmr4_2537: TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane
*
Shewanella sp MR-7

Site:
position = -157
score = 6.09341
sequence = GAAACTTTTTGAAAG

Gene: Shewmr7_2604: TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
*
Shewanella amazonensis SB2B

Site:
position = -151
score = 4.61995
sequence = GAAAGAAAATAAAAG

Gene: Sama_1192: TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane
 
CRON 2.
agaR
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
*
Shewanella sp ANA-3

Site:
position = -71
score = 5.68709
sequence = GAAAGTGTTTGAAGG

Gene: Shewana3_2702: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family
*
Shewanella sp MR-4

Site:
position = -71
score = 6.03883
sequence = GAAAGTGTTTGAAAG

Gene: Shewmr4_2536: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family
*
Shewanella sp MR-7

Site:
position = -71
score = 6.03883
sequence = GAAAGTGTTTGAAAG

Gene: Shewmr7_2603: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
*
Shewanella amazonensis SB2B

Site:
position = -67
score = 5.56488
sequence = GAAACCTATTGAAAG

Gene: Sama_1193: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family
agaO
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3

Gene: Shewana3_2701: Secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49), GH109 family
 
Shewanella sp MR-4

Gene: Shewmr4_2535: Secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49), GH109 family
 
Shewanella sp MR-7

Gene: Shewmr7_2602: Secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49), GH109 family
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B

Gene: Sama_1194: Secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49), GH109 family
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49), GH109 family
agaZ
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3

Gene: Shewana3_2700: Tagatose-6-phosphate kinase (EC 2.7.1.144)
 
Shewanella sp MR-4

Gene: Shewmr4_2534: Tagatose-6-phosphate kinase (EC 2.7.1.144)
 
Shewanella sp MR-7

Gene: Shewmr7_2601: Tagatose-6-phosphate kinase (EC 2.7.1.144)
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B

Gene: Sama_1195: Tagatose-6-phosphate kinase (EC 2.7.1.144)
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Tagatose-6-phosphate kinase (EC 2.7.1.144)
agaS
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3

Gene: Shewana3_2699: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
 
Shewanella sp MR-4

Gene: Shewmr4_2533: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
 
Shewanella sp MR-7

Gene: Shewmr7_2600: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B

Gene: Sama_1196: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
agaK
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3

Gene: Shewana3_2698: N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157)
 
Shewanella sp MR-4

Gene: Shewmr4_2532: N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157)
 
Shewanella sp MR-7

Gene: Shewmr7_2599: N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157)
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B

Gene: Sama_1197: N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157)
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157)
agaA-II
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3

Gene: Shewana3_2697: N-acetylgalactosamine-6-phosphate deacetylase, alternative (EC 3.5.1.25)
 
Shewanella sp MR-4

Gene: Shewmr4_2531: N-acetylgalactosamine-6-phosphate deacetylase, alternative (EC 3.5.1.25)
 
Shewanella sp MR-7

Gene: Shewmr7_2598: N-acetylgalactosamine-6-phosphate deacetylase, alternative (EC 3.5.1.25)
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B

Gene: Sama_1198: N-acetylgalactosamine-6-phosphate deacetylase, alternative (EC 3.5.1.25)
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
N-acetylgalactosamine-6-phosphate deacetylase, alternative (EC 3.5.1.25)
agaP
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3

Gene: Shewana3_2696: Predicted N-acetylgalactosamine permease, GGP family
 
Shewanella sp MR-4

Gene: Shewmr4_2530: Predicted N-acetylgalactosamine permease, GGP family
 
Shewanella sp MR-7

Gene: Shewmr7_2597: Predicted N-acetylgalactosamine permease, GGP family
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B

Gene: Sama_1199: Predicted N-acetylgalactosamine permease, GGP family
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Predicted N-acetylgalactosamine permease, GGP family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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