Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GlcC - Alcaligenaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Glycolate utilization
Effector: Glycolate
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 9 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bordetella avium 197N
Bordetella bronchiseptica RB50 2 2
Bordetella petrii DSM 12804 5 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
glcC
 
Bordetella avium 197N
*
Bordetella bronchiseptica RB50

Site:
position = -25
score = 5.25776
sequence = CGTGGTCATACCAGT

Site:
position = -134
score = 5.61441
sequence = ACTGGTCATACCAGT

Gene: BB0096: Glycolate utilization operon transcriptional activator GlcC
*
Bordetella petrii DSM 12804

Site:
position = -133
score = 5.39204
sequence = CCTGGTCATACCAGT

Site:
position = -24
score = 5.13954
sequence = TCTGGTCATACCAGT

Gene: Bpet4865: Glycolate utilization operon transcriptional activator GlcC
Glycolate utilization operon transcriptional activator GlcC
 
CRON 2.
glcB
 
Bordetella avium 197N

Gene: BAV0105: Malate synthase G (EC 2.3.3.9)
*
Bordetella bronchiseptica RB50

Site:
position = -233
score = 5.25776
sequence = ACTGGTATGACCACG

Site:
position = -124
score = 5.61441
sequence = ACTGGTATGACCAGT

Gene: BB0095: Malate synthase G (EC 2.3.3.9)
*
Bordetella petrii DSM 12804

Site:
position = -219
score = 5.13954
sequence = ACTGGTATGACCAGA

Site:
position = -110
score = 5.39204
sequence = ACTGGTATGACCAGG

Gene: Bpet4866: Malate synthase G (EC 2.3.3.9)
Malate synthase G (EC 2.3.3.9)
 
CRON 3.
glcD1
 
Bordetella avium 197N

Gene: BAV2151: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
 
Bordetella bronchiseptica RB50

Gene: BB1938: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
*
Bordetella petrii DSM 12804

Site:
position = -97
score = 4.62806
sequence = GCTGGTAAGACCATG

Gene: Bpet2736: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
glcE
 
Bordetella avium 197N

Gene: BAV2150: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
 
Bordetella bronchiseptica RB50

Gene: BB1939: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
 
Bordetella petrii DSM 12804

Gene: Bpet2735: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
glcF
 
Bordetella avium 197N

Gene: BAV2149: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
 
Bordetella bronchiseptica RB50

Gene: BB1940: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
 
Bordetella petrii DSM 12804

Gene: Bpet2734: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD